BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951814
Length=278
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44417.1 | Symbols: | pseudogene, similar to CPRD2, blastp ... 348 2e-95
AT5G44440.1 | Symbols: | FAD-binding Berberine family protein ... 339 1e-92
AT5G44410.1 | Symbols: | FAD-binding Berberine family protein ... 222 1e-57
> AT5G44417.1 | Symbols: | pseudogene, similar to CPRD2, blastp
match of 42% identity and 7.0e-94 P-value to GP|13161397|dbj|BAB33033.1||AB056448
CPRD2 {Vigna unguiculata} | chr5:17901832-17903346
REVERSE LENGTH=1515
Length=1515
Score = 348 bits (188), Expect = 2e-95
Identities = 204/212 (96%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 8 CGTTTACAATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTT 67
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1304 CGTTTACAATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAAGAGCTTATGTCAACTT 1363
Query 68 CATGGATCTTGATTTGGGAATGTATCTTGGAAAGGAGGAGACAAAGTACGAGGAAGGAAA 127
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1364 CATGGATCTTGATTTGGGAATGTATCTTGGAAAGGAAGAGACAAAGTACGAGGAAGGGAA 1423
Query 128 GAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGGGTGAAAACGAG 187
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1424 GAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTGAAAACAAG 1483
Query 188 TGTTGATCCAACAGATTTCTTCTGCGATGAAC 219
||||||||||||||||||||||| |||||||
Sbjct 1484 CGTTGATCCAACAGATTTCTTCTGTGATGAAC 1515
> AT5G44440.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17910557-17912312 REVERSE LENGTH=1756
Length=1756
Score = 339 bits (183), Expect = 1e-92
Identities = 210/223 (94%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 8 CGTTTAC-AATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATT 66
||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1376 CGTTTACGAAT-TTATGACTCCATATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATT 1434
Query 67 TCATGGATCTTGATTTGGGAATGTATCTTGGAAAGGAGGAGACAAAGTACGAGGAAGGAA 126
||| |||| | |||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct 1435 TCAAGGATATGGATTTGGGTATGTATCTTGGAAAGAAGAAGACAAAGTACGAGGAAGGAA 1494
Query 127 AGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGGGTGAAAACGA 186
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1495 AGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTGAAGACTA 1554
Query 187 GTGTTGATCCAACAGATTTCTTCTGCGATGAACAGAGCATTCC 229
| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGGTTGATCCAACAGATTTCTTCTGCGATGAACAGAGCATTCC 1597
> AT5G44410.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17891222-17892978 REVERSE LENGTH=1757
Length=1757
Score = 222 bits (120), Expect = 1e-57
Identities = 188/218 (86%), Gaps = 15/218 (7%)
Strand=Plus/Plus
Query 12 TAC-AATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTTCAT 70
||| ||| ||||||||||||||||||| ||||||||| || |||||||||| ||||| |
Sbjct 1485 TACGAAT-TTATGACTCCTTATGTTTCAAAATCTCCACGAAGAGCTTATGTTAATTTTA- 1542
Query 71 G-GATC-TTGATTTGGGAATGTATCTT--G--GAA-AGGAGGAGACAAAGTACGAGGAAG 123
| || | |||||||||||||||||||| | ||| | || ||||||||||||||||||
Sbjct 1543 GAGA-CATTGATTTGGGAATGTATCTTGGGTTGAATATGA--AGACAAAGTACGAGGAAG 1599
Query 124 GAAAGAG-TTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGGGTGAAA 182
|||| | ||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 1600 CAAAG-GTTTGGGGAGTGAAGTATTTCAAGAACAATTTCGATAGATTGGTGAGAGTTAAA 1658
Query 183 ACGAGTGTTGATCCAACAGATTTCTTCTGCGATGAACA 220
|| | ||||||||||| ||||||||||| ||||||||
Sbjct 1659 ACAAATGTTGATCCAATGGATTTCTTCTGTGATGAACA 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12768008246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5