BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951815

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45428.1 | Symbols: CPuORF24 | conserved peptide upstream op...   366    5e-101
  AT5G45430.1 | Symbols:  | Protein kinase superfamily protein | ...   366    5e-101


> AT5G45428.1 | Symbols: CPuORF24 | conserved peptide upstream 
open reading frame 24 | chr5:18407388-18411967 FORWARD LENGTH=2625
Length=2625

 Score =  366 bits (198),  Expect = 5e-101
 Identities = 208/213 (98%), Gaps = 0/213 (0%)
 Strand=Plus/Plus

Query  1    TCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGGTTATATTAAGCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  111  TCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGGTTAGATTAAGCT  170

Query  61   TCGTTTTTAGTGGATTTTCTTCTTTTGAGATATGGAACAAGATTACATCTGCTCAGGCTG  120
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  171  TCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAACAAGATTACATCTGCTCAGGGTG  230

Query  121  CTACCAGTGTCGAGTTTTTTCATTGCAAGAAGCACTCGATTGGCGGTTTCTTGTGCACTC  180
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  231  CTACCAGTATCGAGTTTTTTCATTGCAAGAAGCACTCGATTGGCGGTTTCTTGTGCACTC  290

Query  181  AGATTTCCTTATTGGCTCTTTCGTGAACTGCAC  213
            |||||||||||| ||||||||||||||||||||
Sbjct  291  AGATTTCCTTATCGGCTCTTTCGTGAACTGCAC  323


 Score = 75.0 bits (40),  Expect = 3e-13
 Identities = 45/47 (96%), Gaps = 1/47 (2%)
 Strand=Plus/Plus

Query  213  CTTA-CTGTCTCTTTTCCTCGAGTCTCTGAACCCCTTGAGTGAAATG  258
            |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct  541  CTTAGCTGTGTCTTTTCCTCGAGTCTCTGAACCCCTTGAGTGAAATG  587


> AT5G45430.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:18407388-18411977 FORWARD LENGTH=2635
Length=2635

 Score =  366 bits (198),  Expect = 5e-101
 Identities = 208/213 (98%), Gaps = 0/213 (0%)
 Strand=Plus/Plus

Query  1    TCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGGTTATATTAAGCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  111  TCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGGTTAGATTAAGCT  170

Query  61   TCGTTTTTAGTGGATTTTCTTCTTTTGAGATATGGAACAAGATTACATCTGCTCAGGCTG  120
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  171  TCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAACAAGATTACATCTGCTCAGGGTG  230

Query  121  CTACCAGTGTCGAGTTTTTTCATTGCAAGAAGCACTCGATTGGCGGTTTCTTGTGCACTC  180
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  231  CTACCAGTATCGAGTTTTTTCATTGCAAGAAGCACTCGATTGGCGGTTTCTTGTGCACTC  290

Query  181  AGATTTCCTTATTGGCTCTTTCGTGAACTGCAC  213
            |||||||||||| ||||||||||||||||||||
Sbjct  291  AGATTTCCTTATCGGCTCTTTCGTGAACTGCAC  323


 Score = 75.0 bits (40),  Expect = 3e-13
 Identities = 45/47 (96%), Gaps = 1/47 (2%)
 Strand=Plus/Plus

Query  213  CTTA-CTGTCTCTTTTCCTCGAGTCTCTGAACCCCTTGAGTGAAATG  258
            |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct  541  CTTAGCTGTGTCTTTTCCTCGAGTCTCTGAACCCCTTGAGTGAAATG  587



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11913456513


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5