BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951853

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G41920.1 | Symbols:  | GRAS family transcription factor | ch...   292    1e-78


> AT5G41920.1 | Symbols:  | GRAS family transcription factor | 
chr5:16779749-16781245 FORWARD LENGTH=1497
Length=1497

 Score =  292 bits (158),  Expect = 1e-78
 Identities = 228/259 (88%), Gaps = 15/259 (6%)
 Strand=Plus/Plus

Query  1     GAAGCCGTGGTGGTTCACTAGATGCAACACCGGTTATATGACGTCACCCGGAACGATCTC  60
             ||||| ||||||||||| | |||||| |||||||||||||| || ||  ||||| |||||
Sbjct  939   GAAGCTGTGGTGGTTCATTGGATGCAGCACCGGTTATATGATGTTACAGGGAACAATCTC  998

Query  61    GAGACGTTGGAGATTTTACGGAGGCTGAAACCGAATCTGATTACGGTGGTGGAGCAAAAA  120
             ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct  999   GAGACGTTGGAGATTCTACGGAGGCTGAAACCGAATCTGATCACGGTGGTGGAGCAAGAA  1058

Query  121   TTGAGCTACGACGATGGAGGAAGCTTTTTAGGGAGATTCGTGGAGGCTTTGCAGTACTAT  180
             |||||||||||||||||||||||||||||||| |||||||||||||||||||| |  |||
Sbjct  1059  TTGAGCTACGACGATGGAGGAAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCA-T--TAT  1115

Query  181   TATAGCGCGC-GT--G--G-G---G-A--TGGTTTGGGTGAGGAGAGTGGTGAGAGATTC  228
             |||||||||  ||  |  | |   | |  ||| |||||||| ||||||||||||||||||
Sbjct  1116  TATAGCGCGTTGTTTGACGCGCTAGGAGATGGATTGGGTGAAGAGAGTGGTGAGAGATTC  1175

Query  229   ACGGTGGAGCAGATTGTTT  247
             |||||||||||||||||||
Sbjct  1176  ACGGTGGAGCAGATTGTTT  1194



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5