BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951859
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20440.2 | Symbols: EMB2729, BE1 | Alpha amylase family prot... 1808 0.0
> AT3G20440.2 | Symbols: EMB2729, BE1 | Alpha amylase family protein
| chr3:7123197-7130436 REVERSE LENGTH=3178
Length=3178
Score = 1808 bits (979), Expect = 0.0
Identities = 1072/1117 (96%), Gaps = 5/1117 (0%)
Strand=Plus/Plus
Query 11 GCACCAACAAAAATGGTTTCCCTCTCTAATCAAACCAGATTCTCTTTCCACCCAAACAAC 70
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCACCAACAAAAATGGTGTCCCTCTCTAATCAAACCAGATTCTCTTTCCACCCAAACAAT 120
Query 71 CTTTTCCTTTCCGAGAATA-GGCGTCTGGGAATCTCAGGAGTCAATTTTCCCAGGAAAAT 129
||| || |||||||||| | |||| |||||||||||||||||||||||||||||||| ||
Sbjct 121 CTTGTCGTTTCCGAGAA-ACGGCGCCTGGGAATCTCAGGAGTCAATTTTCCCAGGAAGAT 179
Query 130 CAATG-TGAAAATCACTTGCTTCGCCGCCGAGAGACCACGCCAGGAGAAACAGAAAAAGA 188
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAA-GTTGAAAATCACTTGCTTCGCCGCCGAGAGACCACGCCAGGAGAAACAGAAAAAGA 238
Query 189 AGAGTCAGAGCCAGAGCACTAGTGACGCTGAAGCTGGAGTCGACCCAGTTGGGTTTCTCA 248
|||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct 239 AGAGTCAGAGCCAGAGCACTAGCGACGCTGAGGCTGGAGTTGACCCTGTTGGGTTTCTCA 298
Query 249 CCAGACTGGGAATTGCTGACAGAATCTTTGCTCAATTTCTCCGAGAAAGGCATAAAGCTT 308
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 CCAGACTCGGAATTGCTGACAGAATCTTTGCTCAATTTCTCCGGGAAAGGCATAAAGCTT 358
Query 309 TGAAAGACCTTAAAGATGAGATTCTCAAACGCCACTTCGATTTTAGAGATCTTGCTTCAG 368
||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||||||
Sbjct 359 TGAAAGACCTTAAAGATGAGATTTTCAAACGCCATTTCGATTTCAGAGATTTTGCTTCAG 418
Query 369 GATTTGAGTTACTGGGGATGCATCGACATATGGAACACCGGGTTGACTTTATGGACTGGG 428
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GATTTGAGTTATTGGGGATGCATCGACATATGGAACACCGGGTTGACTTTATGGACTGGG 478
Query 429 GTCCAGGTGCTCGTTATGGTGCTATAATCGGAGATTTCAACGGATGGTCCCCTACAGAAA 488
|||||||| |||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 479 GTCCAGGTTCTCGTTATGGGGCTATAATCGGAGATTTCAATGGATGGTCGCCTACAGAAA 538
Query 489 ATGCAGCCAGAGAGGGCCTATTTGGCCATGATGATTTTGGGTATTGGTTCATTATTCTTG 548
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 539 ATGCAGCTAGAGAGGGCCTATTTGGCCATGATGATTATGGGTATTGGTTCATTATTCTTG 598
Query 549 AGGATAAGTTAAGAGAGGGTGAAGAACCAGACGAACTATACTTTCAGCAGTATAACTATG 608
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 AAGATAAGTTAAGAGAGGGTGAAGAACCAGATGAACTATACTTTCAGCAGTATAACTATG 658
Query 609 TCGATGACTATGATAAGGGTGATAGTGGTGTATCAGCTGAAGAAATCTTCCAGAAAGCTA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCGATGACTATGATAAGGGTGATAGTGGTGTATCAGCTGAAGAAATCTTCCAGAAAGCTA 718
Query 669 ATGATGAGTATTGGGAACCTGGTGAGGACCGGTTTATTAAAAACCGCTTTGAAGTTCCTG 728
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 ATGATGAGTATTGGGAACCTGGTGAGGATCGGTTTATTAAAAACCGCTTTGAAGTTCCTG 778
Query 729 CTAAACTATACGAACAGATGTTTGGCCCGAACAGTCCACAAACATTAGAAGAGCTAGGAG 788
| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 779 CCAAACTATACGAGCAGATGTTTGGCCCGAACAGTCCACAAACGTTAGAAGAGCTTGGAG 838
Query 789 ATATACCAGATGCAGAAACGAGATATAAACAGTGGAAAGAGGAGCATAAAAATGATCCAC 848
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 839 ATATACCAGATGCAGAAACGAGATATAAACAGTGGAAAGAGGAGCATAAAGATGACCCGC 898
Query 849 CTAGTAATCTACCTCCATGCGACATCATTGATAAAGGTCAAGGAAAGCCATATGATATTT 908
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CAAGTAATCTACCTCCATGCGACATCATTGATAAAGGTCAAGGAAAGCCATATGATATTT 958
Query 909 TTAATGTCGTGACATCTCCAGAATGGACAAAGAAATTTTATGAGAAAAAACCTCCAATTC 968
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 959 TTAATGTCGTGACATCTCCAGAATGGACAAAGAAATTTTATGAGAAAGAACCTCCGATTC 1018
Query 969 CATATTGGTTAGAGACACGTAAAGGAAGAAAGGCATGGTTaaaaaaaTACATTCCAGCTG 1028
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1019 CATATTGGTTAGAGACACGTAAAGGAAGAAAGGCATGGTTGCAAAAATATATTCCAGCTG 1078
Query 1029 TTCCACATGGAAGCAAGTATAGATTGTATTTCAATACTCCTGATGGACCGCTTGAACGAG 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTCCACATGGAAGCAAGTATAGATTGTATTTCAATACTCCTGATGGACCGCTTGAACGAG 1138
Query 1089 TGCCTGCTTGGGCTACATATGTGCAACCAG-GTATGA 1124
|||||||||||||||||||||||||||||| | ||||
Sbjct 1139 TGCCTGCTTGGGCTACATATGTGCAACCAGAGGATGA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5