BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951862
Length=515
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11660.1 | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3678835-3... 442 2e-123
AT5G06330.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 222 2e-57
AT2G35960.1 | Symbols: NHL12 | NDR1/HIN1-like 12 | chr2:1510694... 128 5e-29
AT3G52470.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 117 1e-25
> AT3G11660.1 | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3678835-3679943
REVERSE LENGTH=1109
Length=1109
Score = 442 bits (239), Expect = 2e-123
Identities = 288/312 (92%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 205 GGACACAAAGAAATCAACATCTGGTCGCCGTTTGTCTACGGAACCTCCGTTCCCATCGCT 264
||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 623 GGACACAAAGATGTCGACATCTGGTCGCCGTTTGTTTACGGAACCTCCGTTCCCATCGCT 682
Query 265 CCTTTTAACGGCGTTGGTCTTGACGAA-GATAAAGATAACGGCGCCGTTATGTTGATCAT 323
||||||||||||||| |||||||| | |||||||||||||| | |||| ||||||||||
Sbjct 683 CCTTTTAACGGCGTTAGTCTTGAC-ACCGATAAAGATAACGGTGTCGTTTTGTTGATCAT 741
Query 324 TCGTGCTGATGGTAGAGTTCGGTGGAAGGTTGGGACTTTTATCACCGGGAAGTATCATCT 383
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TCGTGCTGATGGTAGAGTGAGGTGGAAGGTTGGGACTTTTATCACCGGGAAGTATCATCT 801
Query 384 TCATGTGAAGTGTCCGGCGTATATTAACTTCGGTAATAAAGCTGCCGGAGTTATCATCGG 443
||||||||||||||| || ||||| ||||||||||| |||||| |||||||||| ||||
Sbjct 802 TCATGTGAAGTGTCCAGCATATATAAACTTCGGTAACAAAGCTAACGGAGTTATCGTCGG 861
Query 444 AGATAACGCCGTTAAGTATACGCTTACCACTAGTTGTAGTGTTAGTGTGTGAAACGGCGA 503
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 862 AGACAACGCCGTTAAGTATACGTTTACCACTAGTTGTAGTGTTAGTGTGTGAAACGGCGA 921
Query 504 CGGTGAAAAATA 515
|| ||||||||
Sbjct 922 CGAAGAAAAATA 933
Score = 313 bits (169), Expect = 1e-84
Identities = 193/205 (94%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 1 TAACAATCCTCCTCATTTGGGCAATTCTCCAACCTTCAAAGCCACGTTTCCTCCTCCAAG 60
|||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 375 TAACAATCCTCCTCATTTGGGCAATTCTCCAACCATCAAAGCCACGCTTCATCCTCCAAG 434
Query 61 ACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCCAACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 ACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCCAACT 494
Query 121 TCCAAATCACTCTTTCTTCCCGTAACCCTAATGACAAGATCGGCGTTTACTACGACCGCC 180
||||||||||||| |||||||| |||||||| |||| |||||| ||||||||||||| |
Sbjct 495 TCCAAATCACTCTCTCTTCCCGGAACCCTAACAACAAAATCGGCATTTACTACGACCGGC 554
Query 181 TTGAAGTCTACGCTACCTACCGGAG 205
|||| ||||||||||| ||||||||
Sbjct 555 TTGACGTCTACGCTACTTACCGGAG 579
> AT5G06330.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr5:1934739-1935644
REVERSE LENGTH=906
Length=906
Score = 222 bits (120), Expect = 2e-57
Identities = 176/203 (87%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 5 AATCCTCCTCA-TTTGGGCAATTCTCCAACCTTC-AAAGCCACGTTTCCTCCTCCAAGAC 62
||| ||||| | |||||||||| || ||||| || ||| ||||| ||| |||||||||||
Sbjct 162 AATTCTCCT-AGTTTGGGCAATCCTTCAACCATCGAAA-CCACGCTTCGTCCTCCAAGAC 219
Query 63 GCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCCAACTTC 122
|||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 220 GCCACCGTCTTCAACTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCAAATTTC 279
Query 123 CAAATCACTCTTTCTTCCCGTAACCCTAATGACAAGATCGGCGTTTACTACGACCGCCTT 182
||| ||||||| || || ||||||||||| ||||||||||| | ||||||||||| |||
Sbjct 280 CAATTCACTCTCTCCTCTCGTAACCCTAACGACAAGATCGGTATCTACTACGACCGTCTT 339
Query 183 GAAGTCTACGCTACCTACCGGAG 205
|| ||||||||| | ||||||||
Sbjct 340 GACGTCTACGCTTCTTACCGGAG 362
> AT2G35960.1 | Symbols: NHL12 | NDR1/HIN1-like 12 | chr2:15106940-15107993
FORWARD LENGTH=1054
Length=1054
Score = 128 bits (69), Expect = 5e-29
Identities = 163/207 (79%), Gaps = 12/207 (6%)
Strand=Plus/Plus
Query 1 TAACAATCCTCCTCATTTGGGCAATTCTCCAACCTTCAAAGCCACGTTTCCTCCTCCAAG 60
||||||| ||||| ||||| ||| |||||||| |||| ||| | ||| |||||||||
Sbjct 311 TAACAATATTCCTCGTTTGGATAATCCTCCAACCGACAAAACCAAGATTCATCCTCCAAG 370
Query 61 ACGCCACCGTCTACGCCTTCAA-CGTCTCCGGCAATCCACCGAACCTCCTCACCTCCAAC 119
||||||||||||||||||| || | |||| | || || |||||||||||||| |||
Sbjct 371 ACGCCACCGTCTACGCCTTTAATC-TCTC-G-CAG-CCT---AACCTCCTCACCTCAAAC 423
Query 120 TTCCAAATCACTCTTTCTTCCCGTAACCCTAA-TGACAAGA-TCGGCGTTTACTACGACC 177
|| || ||||| | |||| ||||||| || | ||||| |||| | ||||||||||
Sbjct 424 TTTCAGATCACGATCGCTTCACGTAACCGAAACT--CAAGAATCGGAATCTACTACGACC 481
Query 178 GCCTTGAAGTCTACGCTACCTACCGGA 204
| ||| | ||||||||||| |||||||
Sbjct 482 GTCTTCACGTCTACGCTACTTACCGGA 508
> AT3G52470.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:19450649-19451982
FORWARD LENGTH=970
Length=970
Score = 117 bits (63), Expect = 1e-25
Identities = 132/164 (80%), Gaps = 9/164 (5%)
Strand=Plus/Plus
Query 38 AAAGCCACGTTTCCTCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCC 97
||| ||| | ||| |||||||||||||||||||||||||||||||| |||| | ||| ||
Sbjct 234 AAA-CCAAGATTCGTCCTCCAAGACGCCACCGTCTACGCCTTCAACCTCTC-G-CAA-CC 289
Query 98 ACCGAACCTCCTCACCTCCAACTTCCAAATCACTCTTTCTTCCCGTAACCCTAA-TGACA 156
| |||||||| || || ||||||||| |||| | | || ||||||||||| | ||
Sbjct 290 A---AACCTCCTTACTTCAAACTTCCAAGTCACAATCGCATCTCGTAACCCTAACTC-CA 345
Query 157 AGATCGGCGTTTACTACGACCGCCTTGAAGTCTACGCTACCTAC 200
||||||| | ||||||||||| || | ||||||||||| |||
Sbjct 346 AGATCGGAATCTACTACGACCGTCTCCACGTCTACGCTACATAC 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24614732030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5