BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951872
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69920.1 | Symbols: ATGSTU12, GSTU12 | glutathione S-transfe... 1140 0.0
> AT1G69920.1 | Symbols: ATGSTU12, GSTU12 | glutathione S-transferase
TAU 12 | chr1:26334250-26335558 REVERSE LENGTH=931
Length=931
Score = 1140 bits (617), Expect = 0.0
Identities = 746/809 (92%), Gaps = 5/809 (1%)
Strand=Plus/Plus
Query 1 ACACAAACTCTTTAAG-CCAGATGTTAAAAAACAAGAAATCAGACAACTCATTGTCTCGA 59
|||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2 ACACAAACTC-TTCAGTCCAGATGTTAAAAAACAAGAAATCAGACAACTCCTTGTCTCGA 60
Query 60 GAAACATTACAAATCaaaaaaagaaaaaaaaCCACGATGGCTCAAAATGGTTCGAACACA 119
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GACACATTACAAATCAAAAAAAGAAAAAAAACCACGATGGCTCAAAATGGTTCGAATACT 120
Query 120 ACTGTGAAGCTGATAGGGACATGGGCAAGCCCATTCGCTTTGAGGGCTCAAGTGGCTCTA 179
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 121 ACTGTGAAGCTGATAGGGACATGGGCAAGCCCATTCGCTATAAGGGCTCAAGTGGCTCTA 180
Query 180 CACCTTAAGTCCGTAGAGCACGAGTATATCGAAGAAACCGATGTTCTGAAAGCAAAGAGC 239
||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 181 CACCTCAAGTCAGTAGAGCACGAGTATGTCGAAGAAACCGATGTTCTGAAAGGAAAGAGC 240
Query 240 GATCTCCTTATTAAATCTAACCCTATACATAAGAAAGTCCCTGTCCTCATCCATGGTGAT 299
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GATCTTCTTATTAAATCCAACCCTATACACAAGAAAGTCCCTGTCCTCATCCATGGTGAT 300
Query 300 ATCTCAATCTGCGAGTCTCTCAACATCGTTCAGTACGTGGATGAATCGTGGCCGTCCGAT 359
| |||||||| || |||||||||||||| || ||||| |||||||| |||||||| |||
Sbjct 301 GTATCAATCTGTGAATCTCTCAACATCGTCCAATACGTCGATGAATCTTGGCCGTCTGAT 360
Query 360 CTTTCTATCCTCCCTTCCCTACCCTCCGATCGTGCCTTTGCTCGTTTTTGGGCTCACTTC 419
||||| |||||||| | || ||||| || ||||||||||| ||||||||||||||||||
Sbjct 361 CTTTCCATCCTCCCAACACTTCCCTCGGAACGTGCCTTTGCCCGTTTTTGGGCTCACTTC 420
Query 420 GTTGACGGAAAGTTGTTTGAATCGATCGATGCGGTAGCGGGAGCGAAAGATGATGCCGCG 479
||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||
Sbjct 421 GTTGACGGAAAGTTGTTTGAATCGATCGATGCGGTGGCGGGAGCAAAAGACGACGCCGCC 480
Query 480 AGGATGGCGTTGGCGGGGAATCTGATGGAGAATCTGGCGGCACTTGAAGAGGCGTTTCAA 539
|||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 AGGATGACATTGGCGGGGAATCTGATGGAGAATCTAGCGGCACTTGAAGAGGCGTTTCAA 540
Query 540 AAGAGTAGCAAAGGCGGAGACTTCTTCGGAGGGGAAAACATTGGGTTTGTTGATATAGCT 599
||||||||||||||||| ||||| || ||||||| |||||||||||||| |||||| ||
Sbjct 541 AAGAGTAGCAAAGGCGGGGACTTTTTTGGAGGGGGGAACATTGGGTTTGTCGATATAACT 600
Query 600 GTTGGGGCCATAGCAGGCCCAATCTCTGTCATCGAAGCGTTTTCAGGTGTTAAGTTTTTG 659
||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 601 GTTGGGGCCATAGTAGGTCCAATCTCTGTCATTGAAGCTTTTTCAGGTGTTAAGTTTTTG 660
Query 660 CGTCCAGACACAACACCGGGCCTGCTTCATTGGGCTGAGAAATTCAGGGCCCATGAAGCT 719
|||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 661 CGTCCAGACACAACACCGGGCCTGATTCAGTGGGCTGAGAAATTTAGGGCCCATGAAGCT 720
Query 720 GTGAAACCTTACATGCCTACCGTTGCCGAGTTTATCGAGTTTGCCAAAAAGAAATTCAAT 779
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 721 GTAAAACCTTACATGCCTACCGTTGCCGAGTTCATCGAGTTTGCCAAAAAGAAATTCAGT 780
Query 780 GTTTAGTGATTGCAT-T-T-ATGATTTTC 805
||||||||| | ||| | | |||||||||
Sbjct 781 GTTTAGTGACTACATCTCTTATGATTTTC 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39232868807
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5