BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951876
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69890.1 | Symbols: | Protein of unknown function (DUF569) ... 1238 0.0
AT1G27100.1 | Symbols: | Actin cross-linking protein | chr1:94... 215 7e-55
> AT1G69890.1 | Symbols: | Protein of unknown function (DUF569)
| chr1:26323111-26324616 REVERSE LENGTH=1244
Length=1244
Score = 1238 bits (670), Expect = 0.0
Identities = 815/883 (92%), Gaps = 18/883 (2%)
Strand=Plus/Plus
Query 12 TATTAGCAA-ATGGAGTTTTTCAATCAAGCTAAAGCCGTAAGGATGCGTAACGTCCATGA 70
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TATTAG-AAGATGGATTTTTTCAATCAAGCTAAAGCCGTAAGGATGCGTAACGTCCATGA 139
Query 71 AAAGTATCTAACGGCGGACGAAGACGAGGAAACGGTGACACAAGACAGGAATGGTTCCGA 130
||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 140 TAAGTATCTAACAGCGGATGAGGACGAGGAAACGGTGACTCAAGACAGGAATGGTTCCGA 199
Query 131 CAAGAGAGCTAGATGGACCGTCGAGCCGGTTCGAGGTTCCTTTGAAGTAATCCGTTTGAG 190
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 200 CAAGAGAGCTAGATGGATTGTCGAGCCGGTTCGTGGTTCCTTTGAAGTGATCCGTTTAAG 259
Query 191 GAGCTGCTACGGTAATTACCTCACTGCCTCAAACGAACGGTTCTTGCTCGGTGCCACTGG 250
||||||||||||||| |||||||| || || || || |||||||||||||| ||||||||
Sbjct 260 GAGCTGCTACGGTAACTACCTCACCGCTTCGAATGAGCGGTTCTTGCTCGGAGCCACTGG 319
Query 251 ACGTAAAGTGGTCTTGTCAAAACCGGCTCGACTCGACTCGTCCGTCGAGTGGGAACCGGC 310
|||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 320 ACGTAAAGTGGTCTTGTCTAAACCGGCTCGACTCGACTCCTCCGTAGAGTGGGAACCGGT 379
Query 311 GAGAGAATGTTCCAAAATGAAGCTTAAGACGAGATACGGCAACTTGCTTCGAGCCAACGG 370
||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 380 GAGAGAAGGTTCCAAAATGAAGCTCAAGACTAGATACGGAAACTTGCTTCGAGCCAACGG 439
Query 371 TGGACTTCCTCCGTGGCGTAACTCTGTCACGCATGACACTCCTCATGTATCGGACTCCTT 430
|||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| || ||
Sbjct 440 TGGACTTCCTCCATGGCGTAACTCTGTCACGCATGACACTTCTCATGTATTGGATTCTTT 499
Query 431 CTTGTGGGATGTTGATGTGGTTGAGATTTTGGTGGGCACGGCCACTCCAGCTCCAGATCC 490
|||||||||||||||||||||||||||||||||||| ||| || | |||| |
Sbjct 500 CTTGTGGGATGTTGATGTGGTTGAGATTTTGGTGGGAACG---ACG--A-CTCC-G---- 548
Query 491 AGCTCCAGCTCCAGCTCCGGTGACAACTCCGCCGCCACATAGGAGACCGTCGTACTCGTA 550
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 549 -GCTCCAGCTCCAGCTCCGGTGACAACTCCTCCGCCACATAGGAGGCCGTCGTACACGTA 607
Query 551 TTCTCCGGTTTCTAGAACATCTTCAGAAAAATCCGAAGAAGAGTTGACCGTGCCGCCGCC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 608 TTCTCCGGTTTCTAGAACATCTTCAGAAAAATCCGAAGAAGAGTTGACCGTGCCGCCACC 667
Query 611 AAAATCTGAAGGGAGGACTATTTACTACCACATCGCGGACGAAGAAGGACACGTGGAGGA 670
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GAAATCTGAAGGGAGGCCTATTTACTACCACATCGCGGACGAAGAAGGACACGTGGAGGA 727
Query 671 AGAATCAGCCGTTGGATACGCTTTGACTTTTAATGGAAACAGCGTGGAACAGTTGACGCA 730
|||||||||||||||||| || |||||||| || ||||| ||||||||||||||||||||
Sbjct 728 AGAATCAGCCGTTGGATATGCGTTGACTTTCAAAGGAAATAGCGTGGAACAGTTGACGCA 787
Query 731 GGCGTTGCAAGAAGAGACTAGCATGGATGATGTTGTGGTGTGTACACGCAATCCTTTAAA 790
||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||
Sbjct 788 GGCGTTGCAAGAAGAGACTAGTATGGATGATGTTGTGGTCTGTACACGCCATCCTTCAAA 847
Query 791 CGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCACCAAATAGTGGAACAATGCATGTCGT 850
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 848 CGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCACCTAATAGTGGAACAATGCATGTCAT 907
Query 851 TCTAGTACCCTCAAGTACTTCTTAAACGGCAAGCTGTGTGGTT 893
|||||||||||||||||||| || |||||||||||||||||
Sbjct 908 TCTAGTACCCTCAAGTACTT---AA-CGGCAAGCTGTGTGGTT 946
> AT1G27100.1 | Symbols: | Actin cross-linking protein | chr1:9407125-9411172
REVERSE LENGTH=2090
Length=2090
Score = 215 bits (116), Expect = 7e-55
Identities = 212/259 (82%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 606 CCGCCAAAATCTGAAGGGA-GGACTATTTACTACCACATCGCGGACGAAGAAGGACACGT 664
||||| ||||||| | ||| | || || || ||||| |||| ||||| |||||||||||
Sbjct 1386 CCGCCTAAATCTG-ATGGACGAACCATATATTACCATGTCGCTGACGAGGAAGGACACGT 1444
Query 665 GGAGGAAGAATCAGCCGTTGGATACGCTTTGACTTTTAATGGAAACAGCGTGGAACAGTT 724
||| || ||| || |||||||||| ||||| || ||||| ||||| ||||||| || |
Sbjct 1445 GGAAGATGAAACAACCGTTGGATATGCTTTCACGTTTAAAGGAAATAGCGTGGCGGAGCT 1504
Query 725 GACGCAGGCGTTGCAAGAAGAGAC-TAGCATGGATGATGTTGTGGTGTGTACACGCAATC 783
||| ||| | |||| |||||| || | ||||||| || | |||||||||||| || | ||
Sbjct 1505 GACTCAGACATTGCGAGAAGAAACGT-GCATGGAAGACGCTGTGGTGTGTACTCGTAGTC 1563
Query 784 CTTTAAACGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCACCAAATAGTGGAACAATGC 843
|||||||||||||||||||||||||||||||||||||||| || || | |||||| |||
Sbjct 1564 CTTTAAACGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCTCCTAACAACGGAACATTGC 1623
Query 844 ATGTCGTTCTAGTACCCTC 862
||||| || || |||||||
Sbjct 1624 ATGTCATTTTACTACCCTC 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5