BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951881

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15410.2 | Symbols:  | Leucine-rich repeat (LRR) family prot...   150    5e-36


> AT3G15410.2 | Symbols:  | Leucine-rich repeat (LRR) family protein 
| chr3:5203292-5207559 FORWARD LENGTH=2141
Length=2141

 Score =  150 bits (81),  Expect = 5e-36
 Identities = 144/170 (85%), Gaps = 21/170 (12%)
 Strand=Plus/Plus

Query  2    Cgagagagagag-agT-TTTAATGGATCGGATTCTGAAAGCGGCTCGAACGTCTGGTTCG  59
            |||||||||||| | | |||||||||||||||||||||||| |||||||| |||||||||
Sbjct  68   CGAGAGAGAGAGAAATATTTAATGGATCGGATTCTGAAAGCAGCTCGAACATCTGGTTCG  127

Query  60   CTGAATCTTTCCAATCG--CTCTC--------T-C-A--A----GGATGTACCTATTGAG  101
            |||||||||||||||||  |||||        | | |  |    ||||||||||| ||||
Sbjct  128  CTGAATCTTTCCAATCGTTCTCTCAATTTTGATCCTATTACCTGGGATGTACCTACTGAG  187

Query  102  GTATATCAATGTTTGGAAACGACCGGAGAAGGAGAAAACTGCTCGGGAGG  151
            ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  188  GTATATCAATGTTTGGAAACGACCGGAGAAGGAGAAAACTGGT-GGGAGG  236



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10757298286


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5