BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951892

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01660.1 | Symbols:  | S-adenosyl-L-methionine-dependent met...   261    3e-69


> AT3G01660.1 | Symbols:  | S-adenosyl-L-methionine-dependent methyltransferases 
superfamily protein | chr3:245478-246508 FORWARD 
LENGTH=952
Length=952

 Score =  261 bits (141),  Expect = 3e-69
 Identities = 170/184 (92%), Gaps = 1/184 (1%)
 Strand=Plus/Plus

Query  87   GAAGTCAAGTACGAGAAAGTGGTGGGGCATGGTCTTAACGCACAAGAGCTTGCACGTAAC  146
            ||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||||
Sbjct  388  GAAGTGAAGTACGAGAAAGTAGTAGGGCATGGTCTTAACGCACAGGAGCTTGCTCGTAAC  447

Query  147  CCTAGACTCGATTACTTCTTCGTCAAGGATCTCAACGAAGATCAGAAATTTGAGTTCGAA  206
            |||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct  448  CCTAGACTCGATTACTTCTTCGTCAAGGATCTTAATGAAGATCAGAAGTTCGAGTTCGAA  507

Query  207  GACAAGTCTTTCGACGCTGTTTTATGTGCTGTCGGTGTACAGTATCTACAACAACCCGAT  266
            ||||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||| 
Sbjct  508  GACAAGTATTTCGACGCTGTTTTGTGTTCTGTTGGTGTACAGTATCTACAACAACCCGA-  566

Query  267  AAAG  270
            ||||
Sbjct  567  AAAG  570



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16487821672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5