BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951896

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70390.1 | Symbols:  | F-box and associated interaction doma...   119    1e-26


> AT1G70390.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:26529171-26530282 REVERSE LENGTH=999
Length=999

 Score =  119 bits (64),  Expect = 1e-26
 Identities = 131/162 (81%), Gaps = 10/162 (6%)
 Strand=Plus/Plus

Query  21   ATGGAGAATCCAAATTTCGGTACACTTCCTGAAGATCTACAAAAGGAGATTCTGTTACGG  80
            ||||| ||| |||||||||  |||||||||||||||||||||||||||||| ||||| ||
Sbjct  1    ATGGATAATTCAAATTTCGAAACACTTCCTGAAGATCTACAAAAGGAGATTTTGTTATGG  60

Query  81   TTGCCTCTAAAATCCTTGGGTGTA-TGCATCGGCGTCTCAAAGCAATG-GAGATCT-TTA  137
            ||| ||| ||||||||||| || | | || |  |||||||||| |||| |  |||| |||
Sbjct  61   TTGTCTCCAAAATCCTTGG-TGAAATTCACCCTCGTCTCAAAGAAATGTGC-ATCTATTA  118

Query  138  ATCCGCTCCC-AAGAATTCAGAGATCTTTAC-TCGAGCCGAT  177
             |||| |    ||||||||| || ||||||| | | ||||||
Sbjct  119  -TCCG-TGGGGAAGAATTCAAAGCTCTTTACAT-GCGCCGAT  157



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11360511274


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5