BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951906
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66780.1 | Symbols: | MATE efflux family protein | chr1:249... 2100 0.0
AT1G64820.1 | Symbols: | MATE efflux family protein | chr1:240... 1291 0.0
> AT1G66780.1 | Symbols: | MATE efflux family protein | chr1:24909213-24911485
FORWARD LENGTH=1458
Length=1458
Score = 2100 bits (1137), Expect = 0.0
Identities = 1320/1409 (94%), Gaps = 9/1409 (1%)
Strand=Plus/Plus
Query 23 ATGGAAAAGGGCTTCTCGTTGGTGCCTAaagaagaggaagaagaaggagaagattgtag- 81
|||||||| || |||||||||||||| |||||||||||||||| | |||||||| |||
Sbjct 1 ATGGAAAATGGTTTCTCGTTGGTGCCCAAAGAAGAGGAAGAAG-A--AGAAGATTATAGT 57
Query 82 agatgagaaatctgaagaCCAGTCGAGTTATTACTTGTCAATAGAGATGATGAAGAAGGT 141
| |||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||
Sbjct 58 A-ATGAGAAATCTGAAGATCAGACGAGTTATTATTTGTCAACAGAGATGATGAAGAAGGT 116
Query 142 AAGCTCCATGGCTGCTCCAATGGTGGCTGTGGCTGCTTCTCAGTACCTCCTTCAAGTTAT 201
||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 117 AAGCTTCATGGCTGCACCAATGGTGGCTGTGGCTGCTTCTCAATACCTCCTTCAAGTTAT 176
Query 202 CTCCATTGTTATGGCCGGTCACTTGGACGAGCTCTCTCTCTCCGCCGTTGCTATCGCTAC 261
||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||
Sbjct 177 CTCCATTGTTATGGCTGGTCACTTGGACGAGCTTTCTCTCTCAGCCGTTGCTATTGCCAC 236
Query 262 TTCTCTTACCAACGTCACCGGCTTCAGCCTCCTCTTTGGATTGGCAGGTGCATTAGAGAC 321
|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 237 TTCTCTTACCAATGTCACCGGCTTCAGCCTCATCTTTGGATTGGCAGGTGCGTTAGAGAC 296
Query 322 ACTGTGTGGTCAAGCTTTTGGAGCTGAGCAATTTAGGAA-AGTCAGTGCATATACTTACG 380
|||||||||||||||||||||||||| |||||||||||| | |||||||||| |||||||
Sbjct 297 ACTGTGTGGTCAAGCTTTTGGAGCTGGGCAATTTAGGAATA-TCAGTGCATACACTTACG 355
Query 381 GCTCAATGCTATGTCTTCTCTTGTTCTGTTTTCCAATCTCACTTTTGTGGGTGTTTATGG 440
||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||
Sbjct 356 GCTCAATGCTATGTCTTCTCTTGGTCTGTTTCCCAATCTCACTTTTGTGGGTTTTTATGG 415
Query 441 ACAAACTCTTGGAGCTTTTCCATCAAGATCCTCTCATCTCTCAACTAGCTTGTAGATATT 500
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct 416 ACAAACTCTTGGAGCTTTTCCATCAAGATCCTCTTATCTCTCAATTAGCTTGTAGATACT 475
Query 501 CGATCTGGCTTATACCGGCTTTATTCGGATACTCTGTTCTTCAATCTATGACTCGGTTTT 560
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 476 CAATCTGGCTCATACCGGCTTTATTCGGATACTCTGTTCTTCAATCTATGACTCGATTTT 535
Query 561 TCCAGTCACAAGGATTGGTTCTTCCTCTCTTCTTGAGCTCTCTCGGAGCTCTCTGTTTTC 620
|||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||
Sbjct 536 TCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCTCTCTTGGAGCTCTCTTTTTTC 595
Query 621 ACATTCCCTTTT-GTTGGCTTCTAGTCTATAAACTGAGATTTGGAATCGTCGGCGCTGCT 679
|| ||||||||| | |||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 596 ACGTTCCCTTTTCG-TGGCTTCTTGTCTATAAACTGAGATTCGGAATCGTCGGCGCCGCT 654
Query 680 TTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGGTTTGCTTTGGGTTTTCATGAGAAAA 739
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 655 TTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGGTTTGCTTTGGGCTTTCATGAGAGAC 714
Query 740 TCTGCTCTATATCGCGAAAACTGGAATCTTCGGGCGCAAGAAAtttttttGAGCATGAAG 799
|||||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 715 TCTGCTCTCTATCGAAAAAACTGGAATCTTCGGGCACAAGAAATCTTTTTGAGCATGAAG 774
Query 800 CAGTTCATTACCCTCGCAATTCCCTCTGCAATGATGACTTGCCTAGAATGGTGGTCGTTT 859
|||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 775 CAGTTCATTACCCTAGCAATTCCCACTGCAATGATGACTTGCCTGGAATGGTGGTCGTTT 834
Query 860 GAGCTTCTTATACTAATGTCAGGACTCTTACCAAACTCAAAGCTCGAAACATCAGTCCTA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 GAGCTTCTTATACTAATGTCAGGACTCTTACCAAACTCAAAGCTCGAAACATCGGTCCTA 894
Query 920 TCCATTTGCCTAACAATGTCGTCTCTCCATTACGTTCTGGTGAATGCAATAGGAGCAGCC 979
|||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||
Sbjct 895 TCCATTTGCCTAACAATGTCGTCTCTGCATTACGTTATCGTGAATGCCATAGGAGCAGCA 954
Query 980 GCGAGCACACACGTCTCAAACAAGCTAGGAGCTGGAAATCCAAAGGCAGCTCGAGCCGCG 1039
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 955 GCGAGCACACATGTCTCAAACAAGCTAGGAGCTGGAAATCCAAAGGCAGCTCGATCTGCG 1014
Query 1040 GCTAATTCTGCGATTTTTCTAGGCGTGATTGATGCAGCAATAGTAAGCATCACTCTCTAT 1099
|||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||
Sbjct 1015 GCTAATTCTGCGATTTTTCTTGGCATGATTGATGCAGCCATAGTAAGCATCAGTCTCTAC 1074
Query 1100 AGCAACAAAAGTAATTGGGCTTATATATTCAGCAACGAGAGTGAAGTCGCTGACTATGTA 1159
||| ||| ||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1075 AGCTACAGAAGAAATTGGGCTTATATATTCAGTAATGAGAGTGAAGTCGCTGACTATGTC 1134
Query 1160 ACTCAAATCACACCCTTTCTATGCCTATCAATTGGTGTTGACAGCTTTCTCGCCGTACTC 1219
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1135 ACTCAAATCACACCCTTTCTCTGTCTATCAATTGGTGTTGACAGCTTTCTCGCCGTACTC 1194
Query 1220 TCAGGAGTTGCTAGAGGAACAGGGTGGCAACATATAGGAGCTTATGCAAACATAGGATCA 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TCAGGAGTTGCTAGAGGAACAGGGTGGCAACATATAGGAGCTTATGCAAACATAGGATCG 1254
Query 1280 TATTATCTGGTCGGGATCCCGGTAGGTTCGATCTTGTGTTTCGTTGTGAAATTGAGAGGG 1339
|||||||| |||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1255 TATTATCTAGTCGGGATCCCGGTAGGTTCAATCTTGTGTTTTGTAGTGAAATTGAGAGGG 1314
Query 1340 AAAGGACTTTGGATCGGTATATTGATTGGCTCTACTTTACAAACGATTGTTCTTGCTCTT 1399
|||||||||||||||||||||||| | || || ||| |||||||||||||||||||||||
Sbjct 1315 AAAGGACTTTGGATCGGTATATTGGTAGGTTCCACTCTACAAACGATTGTTCTTGCTCTT 1374
Query 1400 GTCACTTTCTTCACCAATTGGGAACAAGA 1428
|||||||||||||||||||||||||||||
Sbjct 1375 GTCACTTTCTTCACCAATTGGGAACAAGA 1403
> AT1G64820.1 | Symbols: | MATE efflux family protein | chr1:24088605-24090558
FORWARD LENGTH=1509
Length=1509
Score = 1291 bits (699), Expect = 0.0
Identities = 1128/1334 (85%), Gaps = 34/1334 (3%)
Strand=Plus/Plus
Query 112 TTACTTGTCAATAGAGATGATGAAGAAGGTAAGCTCCATGGCTGCTCCAATGGTGGCTGT 171
||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 69 TTATTTGTCAATGGAGATGATGAAGAAGGTGAGCTCCATGGCGGCTCCAATGGTGGCAGT 128
Query 172 GGCTGCTTCTCAGTACCTCCTTCAAGTTATCTCCATTGTTATGGCCGGTCACTTGGACGA 231
| | |||||| | |||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct 129 TTCGGTTTCTCAATTCCTCCTTCAAGTCATCTCCATGGTTATGGCTGGTCATTTGGACGA 188
Query 232 GCTCTCTCTCTCCGCCGTTGCTATCGCTACTTCTCTTACCAACGTCACCGGCTTCAGCCT 291
|||||| ||||| || || || || || ||||| || ||||| ||||| || ||||||||
Sbjct 189 GCTCTCGCTCTCAGCTGTCGCAATTGCCACTTCCCTCACCAATGTCACTGGTTTCAGCCT 248
Query 292 CCTCTTTGGATTGGCAGGTGCATTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGAGCA 351
| || |||| || |||||||| ||||| || || || ||||||||||||||||| || ||
Sbjct 249 CATCGTTGGGTTTGCAGGTGCGTTAGACACTCTTTGCGGTCAAGCTTTTGGAGCAGAACA 308
Query 352 ATTTAGG-AAAGTCAGTGCATATACTTACGGCTCAATGCTATGTCTTCTC-TTGTTCTGT 409
|||| || ||| | ||||||| |||||| |||||||||| ||||||||| || ||||||
Sbjct 309 ATTT-GGAAAAATTGGTGCATACACTTACAGCTCAATGCTCTGTCTTCTCGTT-TTCTGT 366
Query 410 TTTCCAATCTCACTTTTGT-GGGTGTTT-ATGGACAAACTCTTGGAGCTTTTCCATCAAG 467
||| |||||| || | || ||| ||| |||||||| ||||||||| ||||||||||||
Sbjct 367 TTTTCAATCT--CTATCGTATGGTTTTTCATGGACAAGCTCTTGGAGATTTTCCATCAAG 424
Query 468 ATCCTCTCATCTCTCAACTAGCTTGTAGATATTCGATCTGGCTTATACCGGCTTTATTCG 527
||||||||||||||||| ||||||| ||||| || |||||||| ||||||||||||||||
Sbjct 425 ATCCTCTCATCTCTCAATTAGCTTGCAGATACTCAATCTGGCTCATACCGGCTTTATTCG 484
Query 528 GATACTCTGTTCTTCAATCTATGACTCGGTTTTTCCAGTCACAAGGATTGGTTCTTCCTC 587
||| | || |||||||| |||||||||||| |||||||||||||||| | ||||||||
Sbjct 485 GATTCACTCTTCTTCAACCTATGACTCGGTATTTCCAGTCACAAGGAATAACTCTTCCTC 544
Query 588 TCTTCTTGAGCTCTCTCGGAGCTCTCTGTTTTCACATTCCCTTT-TGTTGGCTTCTAGTC 646
||||| |||||||||| |||||||| |||||||||||| ||||| ||||||||||| |||
Sbjct 545 TCTTCGTGAGCTCTCTTGGAGCTCTTTGTTTTCACATT-CCTTTCTGTTGGCTTCTTGTC 603
Query 647 TATAAACTGAGATTTGGAATCGTCGGCGCTGCTTTGTCCATAGGTTTTTCGTATTGGCTC 706
|||||||||| ||||||||| || ||||| ||||||||||| |||||||| |||||||||
Sbjct 604 TATAAACTGAAATTTGGAATAGTTGGCGCCGCTTTGTCCATCGGTTTTTCATATTGGCTC 663
Query 707 AACGTAGGTTTGCTTTGGGTTTTCATGAGAAAATCTGCTCTATATCGCGAAAACTG--GA 764
|||||| |||||||||| ||||||||||| | |||||| | |||| | ||| || ||
Sbjct 664 AACGTATTTTTGCTTTGGATTTTCATGAGATACTCTGCTTTGCATCGTG-AAA-TGAAGA 721
Query 765 ATCTTCGG-GCGCAAGAAAtttttttGAGCATGAAGCAGTTCATTACCCTCGCAATTCCC 823
||||| || ||||||| | | | |||||||||||||||||| ||||||| || |||
Sbjct 722 ATCTT-GGTTTGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCGATCCCC 780
Query 824 TCTGCAATGATGACT-TGCCTAGAATGGTGGTCGTTTGAGCTTCTTA-TACTAATGTCAG 881
||||||||||||| | ||||| |||||||||||||||||| ||| || |||||||||| |
Sbjct 781 TCTGCAATGATGA-TATGCCTGGAATGGTGGTCGTTTGAGATTC-TACTACTAATGTCTG 838
Query 882 GACTCTTACCAAACTCAAAGCTCGAAACATCAGTCCTATCCATTTGCCTAACAATGTCGT 941
||||||||||||||||||||||||||||||| || ||||||||||||| |||| |||
Sbjct 839 GACTCTTACCAAACTCAAAGCTCGAAACATCGGTGATATCCATTTGCCTCACAACATCGG 898
Query 942 CTCTCCATTACGTTCTGGTGAATGCAATAGGAGCAGCCGCGAGCACACACGTCTCAAACA 1001
|| | |||| ||||||||||||||| ||||||||| |||| |||||||| |||||||||
Sbjct 899 CTGTGCATTTCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACACATGTCTCAAACG 958
Query 1002 AGCTAGGAGCTGGAAATCCAAAGG-CAGCTCGAGCCGCGGCTAATTCTGCGATTTTTCTA 1060
|||||||||||||||||| | ||| ||||||||||||||| ||||||||| ||||| ||
Sbjct 959 AGCTAGGAGCTGGAAATC-ATAGGGCAGCTCGAGCCGCGGTTAATTCTGCCATTTTCCTT 1017
Query 1061 GGCG-TGATTGATGCAGCAATAGTAAGCATCACTCTCTATAGCAACA-AAAGTAA-TTGG 1117
|| | || ||| |||| |||| || |||||| || || || || ||| || ||||
Sbjct 1018 GGTGGTG-TTGGTGCATTAATAACAACCATCACACTTTACAGTTACCGAAA--AAGTTGG 1074
Query 1118 GCTTATATATTCAGCAACGAGAGTGAAGTCGCT-GACTATGTAACTCAAATCACACCCTT 1176
| |||| |||||||||||||||| ||||| | | | ||| | ||| |||||||||||| |
Sbjct 1075 GGTTATGTATTCAGCAACGAGAGAGAAGTGGTTCG-CTACGCAACCCAAATCACACCCAT 1133
Query 1177 TCTATGCCTATCAATTGGT-GTTGACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAGAG 1235
||| |||||||| ||| | ||| |||||||||||||||| |||||||| ||||| ||||
Sbjct 1134 TCTCTGCCTATCCATTT-TCGTTAACAGCTTTCTCGCCGTGCTCTCAGGGGTTGCCAGAG 1192
Query 1236 GAACAGGGTGGCAACATATAGGAGCTTATGCAAACATAGGATCATATTATCTGGTCGGGA 1295
|| |||||||||||| |||||||| |||||||| | |||||||||||||||| ||||| |
Sbjct 1193 GATCAGGGTGGCAACGTATAGGAGGTTATGCAAGCTTAGGATCATATTATCTTGTCGGAA 1252
Query 1296 TCCCGGTAGGTTCGATCTTGTGTTTCGTTGTGAAATTGAGAGGGAAAGGACTTTGGATCG 1355
||||| |||| | | |||||||||| || |||||||||||||||||||||||||||| |
Sbjct 1253 TCCCGTTAGGATGGTTCTTGTGTTTTGTCATGAAATTGAGAGGGAAAGGACTTTGGATTG 1312
Query 1356 GTATATTGATTGGCTCTACTTTACAAA-CGATTGTTCTTGCTCTTGTCACTTTCTTCACC 1414
||||| | || | ||| ||| | ||| | |||||| ||||||||||||| |||||||||
Sbjct 1313 GTATACTCATAGCCTCCACTATCCAACTC-ATTGTTTTTGCTCTTGTCACCTTCTTCACC 1371
Query 1415 AATTGGGAACAAGA 1428
||||||||||||||
Sbjct 1372 AATTGGGAACAAGA 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5