BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951907

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G33405.1 | Symbols:  | pseudogene, hypothetical protein | ch...  67.6    1e-10


> AT5G33405.1 | Symbols:  | pseudogene, hypothetical protein | 
chr5:12683327-12684600 FORWARD LENGTH=1274
Length=1274

 Score = 67.6 bits (36),  Expect = 1e-10
 Identities = 101/130 (78%), Gaps = 14/130 (11%)
 Strand=Plus/Plus

Query  219  GTAGTTTTATATAACCCTACCACAAGGCAGTCCTT--GTACTTCCTAAAGAAGAAAACGA  276
            |||| | ||||||||||||||||||||||||||||  | ||| || | | | ||   || 
Sbjct  512  GTAGCTATATATAACCCTACCACAAGGCAGTCCTTTCG-ACTACCGATA-ATGA---CG-  565

Query  277  TGCACATGGAGA-CTAGTTTCATCGGGTACGACCCTCTT-GAGAATCAATATAAAGTATT  334
             ||| |||| || || | ||| |||| || ||||| | | ||||||||||| ||||||||
Sbjct  566  -GCA-ATGG-GAACTTGCTTCTTCGGATATGACCC-CATAGAGAATCAATACAAAGTATT  621

Query  335  GTTCTTACCA  344
            | || |||||
Sbjct  622  GCTCATACCA  631



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5