BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951910

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21055.1 | Symbols: PSBTN | photosystem II subunit T | chr3:...   688    0.0  


> AT3G21055.1 | Symbols: PSBTN | photosystem II subunit T | chr3:7376635-7377186 
REVERSE LENGTH=552
Length=552

 Score =  688 bits (372),  Expect = 0.0
 Identities = 396/408 (97%), Gaps = 0/408 (0%)
 Strand=Plus/Plus

Query  6    AATCAACTATCAAGCAATGGCATCGATGACCATGACCGCTACTTTCCTCCCGGCCATCGC  65
            |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct  99   AATCAACTATCAAGCAATGGCATCGATGACCATGACCGCTACCTTCTTCCCGGCCGTCGC  158

Query  66   CAAGCTTCCCTCAGCCACCGGCGGACGAAGGCTCTCGGTAGTCAGAGCCTCCACGAGCGA  125
            |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  159  CAAGGTTCCCTCAGCCACCGGCGGACGAAGGCTCTCCGTAGTCAGAGCCTCCACGAGCGA  218

Query  126  CAACACACCCAGCTTACAAGTCAAGGAACAGTGCAGCACCACAATGAGGAGGGACCTCAT  185
            |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  219  CAACACACCCAGCTTAGAAGTCAAGGAACAGAGCAGCACCACAATGAGGAGGGACCTCAT  278

Query  186  GTTCACGGCTGCAGCTGCAGCGGTTTGTTCTTTGGCTAAAGTAGCCATGGCTGAAGAAGA  245
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  279  GTTCACGGCTGCAGCTGCAGCGGTTTGTTCTTTGGCTAAGGTAGCCATGGCTGAAGAAGA  338

Query  246  AGAGCCCAAGCGAGGGACAGAGGCGGCCAAGAAGAAATACGCACAAGTTTGTGTCACAAT  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  339  AGAGCCCAAGCGAGGGACAGAGGCGGCCAAGAAGAAATACGCACAAGTTTGTGTCACAAT  398

Query  306  GCCTACGGCCAAGATCTGCCGCTACTGATTCAACAAACCACCTTCTTCATGCCTATCCCT  365
            |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||
Sbjct  399  GCCTACGGCCAAGATCTGCCGCTACTGATTCAACAACCCACCTTCTGCATGTCTATCTCT  458

Query  366  CTCTTTCAATTTCGGTAAATTTTCTCAATTAAGTTTGGTCTGTAATCG  413
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  459  CTCTTTCAATTTCGGTAAATTTTCTCAATTAAGTTTGGTCTGTAATCG  506



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19554154361


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5