BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951919

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62380.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box ass...   460    3e-129


> AT3G62380.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box associated 
interaction domain (InterPro:IPR017451); BEST Arabidopsis 
thaliana protein match is: F-box family protein (TAIR:AT1G71320.1); 
Has 422 Blast hits to 419 proteins in 26 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 420; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 
| chr3:23083523-23085035 REVERSE LENGTH=1247
Length=1247

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 267/276 (97%), Gaps = 0/276 (0%)
 Strand=Plus/Plus

Query  1    TCCTTGTTCTTCGATTGGAAATGTCTAGTGATCGTTGTTCAAGAACCCTATTTTTGGATT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  242  TCCTTGTTCTTCGATTGGAAATGTCTAGTGATCGTTGTTCAAGAACCCTATTTTTGGAAA  301

Query  61   CTTATTCAAAAGATCATCACGACCACATAAAAATCTTTATTCATTCTTACACATCTCCAG  120
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  302  CTTATTCAAAAGATCATCACGACCACATAAACATCTTTATTCATTCTTACACATCTCCAG  361

Query  121  TTCCATATCCCATATATTCTATTTATGATACAGTTGGTCAAATAATGGGGTATTGCAACG  180
            |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  362  TTCCATATCCCAAATATTCTACTTATGATACAGTTGGTCAAATAATGGGGTATTGCAACG  421

Query  181  GAATAGTCTGCATCTACGATCTCGGTTACATTTATCTGATTAACCCTGCGACAAGAAAAC  240
            |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct  422  GAATAGTCTGCATCTACGATCTCGGTTACATTTATCTGATTAACCCCGCAACGAGAAAAC  481

Query  241  TCCGGATTCTTTCTCCCGAGTTTTTGCGAGAGAATA  276
            |||||||||||||||||||||||||||||||| |||
Sbjct  482  TCCGGATTCTTTCTCCCGAGTTTTTGCGAGAGTATA  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16186215178


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5