BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951922
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49530.1 | Symbols: | SIN-like family protein | chr5:201005... 963 0.0
> AT5G49530.1 | Symbols: | SIN-like family protein | chr5:20100579-20104447
FORWARD LENGTH=2429
Length=2429
Score = 963 bits (521), Expect = 0.0
Identities = 705/786 (90%), Gaps = 44/786 (6%)
Strand=Plus/Plus
Query 7 CAGGAAGTAAAAATATGGACTTTGATGATGAAGACAAACCAAAAGAGGTTGCCAAAACCC 66
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 141 CAGGAAGTAAAAATATGGACTTTGATGATGATGACAAACCAAAAGAGGTTACCAAAACCC 200
Query 67 GTAGATTCGCTCCTGGCCGTGCCGGAAAG--T----------CTAAACC-GAA---AC-- 108
||||||||||||||||||||||||||||| | ||||||| ||| ||
Sbjct 201 GTAGATTCGCTCCTGGCCGTGCCGGAAAGTCTAAACCCAAACCTAAACCGGAACCCACTG 260
Query 109 C---TAAACCGG-A-A----CCGCCGCAATCACAAACTGAGTCTGTGAGCAAGAGTGAGC 159
| |||||||| | | |||||||| |||||||||||||| |||||||||| |||||
Sbjct 261 CTGATAAACCGGTACAGCCGCCGCCGCAGTCACAAACTGAGTCCGTGAGCAAGACTGAGC 320
Query 160 ATGACGTTGATGCTAAAGGT-GCTGGTC-CTAAGGTTGAAACTGAGGTTTATAATGGCTC 217
||||||||||||||||| | | ||| | ||||||||||||||||||||| |||||||||
Sbjct 321 ATGACGTTGATGCTAAA-TTCGTTGG-CACTAAGGTTGAAACTGAGGTTTGTAATGGCTC 378
Query 218 TGTTAAAATGGAGATTGATTCAAAAGTGGATAAAGAGCCAGAGTTCATGGATACTGAGTT 277
||| || |||||||| ||||||||||| ||||||||||| ||| ||||||| ||||||||
Sbjct 379 TGTGAAGATGGAGATCGATTCAAAAGTCGATAAAGAGCCTGAGATCATGGAAACTGAGTT 438
Query 278 GATTGAGGAAGATGAGCAGCTTCCATTGCAGGA-G-g-a--a-gaagaagaagaag-a-a 329
||| ||||||||| ||||||||||||||||||| | | | | ||||||||||||| | |
Sbjct 439 GATGGAGGAAGATCAGCAGCTTCCATTGCAGGAGGAGAAGGAGGAAGAAGAAGAAGAAGA 498
Query 330 -gaTGTTGTTGTTCGTGAAATCGATGTTTTCTTTAATCCGTCGT-TTGATGCTAATACTA 387
|| ||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||
Sbjct 499 CGACGTTGTTGTTCGTGAAATTGATGTTTTCTTTAAGCCGTC-TATTGATGCTAATACTC 557
Query 388 AGCTTTATGTTCTACAATATCCTCTAAGACCGTCTTGGCGTCCATACGAAATGGATGAAC 447
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 558 AGCTTTATGTTTTACAATATCCTCTAAGACCATCTTGGCGTCCATACGAAATGGATGAAC 617
Query 448 GATGCGAAGAAGTTAGAGTGAATACTTCTACCTCCCAAGTGGAAATTGACTTGTCTATGG 507
| ||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||
Sbjct 618 GTTGCGAAGAAGTTAGAGTGAATCCTTCTACATCGCAAGTGGAAATTGATTTGTCTATGG 677
Query 508 ATGTTCATTCGAAGAACTATGACTCCAATTTTGGACTAAATATGACTAAGCAGACCTTGA 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 ATGTTCATTCGAAGAACTATGACTCCAATTTTGGACTAAATATGACTAAGCAGACCTTGA 737
Query 568 AAACAACATGGAAGCAGCCTCCTACTTTGGATTATGCTGTTGGGGTTCTTTCAGGTGATA 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 AAACAACATGGAAGCAGCCTCCTACTTTGGATTATGCTGTTGGGGTTCTTTCAGGTGATA 797
Query 628 AGTTACACTTGAATCCTGTTCATGCTGTTGCTCAGCTCCGGCCGTCTATGCAGTATCTTT 687
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 798 AGTTACACTTGAATCCTGTTCATGCTGTTGCCCAGCTCCGGCCGTCTATGCAGTCTCTTT 857
Query 688 CATCCAACGGCaaaaaa-aaaCAAGAAGAATCTACTGAAGAATCTGTCGGCACATCCAAA 746
||||| || |||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct 858 CATCCGACAA-AAAAAAGAAACAAGAAGAATCCACTGAAGAATCTGTGGGAACATCCAAA 916
Query 747 AAACAG 752
|| |||
Sbjct 917 AAGCAG 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5