BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951943

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper ...   472    2e-132
  AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits t...   110    2e-23 


> AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper 
70 | chr5:24472639-24473319 FORWARD LENGTH=621
Length=621

 Score =  472 bits (255),  Expect = 2e-132
 Identities = 290/307 (94%), Gaps = 2/307 (1%)
 Strand=Plus/Plus

Query  241  TCTCTAACCGGGAATATGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGC  300
            ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  230  TCTCTAACCGGGAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGC  289

Query  301  TGCAACAACAAGTCAAACAGCTCATGATGTTGAATCATCACTTG-CATGAGAAAGTCATC  359
            |||||||||||||  |||| |||||||||||||||||||||||| | |||||||||||||
Sbjct  290  TGCAACAACAAGTTGAACAACTCATGATGTTGAATCATCACTTGTC-TGAGAAAGTCATC  348

Query  360  AACTTCTTGGAAAGCAACCACCAAATCCTGCACGAGAACTCACAGCTGAAAGAGAAAGCC  419
            ||||| |||||||||||||| || ||||| || ||||||||||||||||||||||||| |
Sbjct  349  AACTTGTTGGAAAGCAACCATCAGATCCTACAAGAGAACTCACAGCTGAAAGAGAAAGTC  408

Query  420  TCTTCCTTTCACTTGCTCATGGCAGATGTGTTATTACCCATGAGAATTGCAGAGAGCAAT  479
            |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| 
Sbjct  409  TCTTCCTTTCACTTGCTCATGGCAGATGTGCTATTACCCATGAGAAATGCAGAGAGCAAC  468

Query  480  ATCAATGACCGCAATGTGAATTATCTAAGAGGAGAAACATCAAACCGTCCCACCAACAGT  539
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  469  ATCAATGACCGCAATGTGAATTATCTAAGAGGAGAACCATCAAACCGTCCCACCAACAGT  528

Query  540  CCCTTTG  546
            |||||||
Sbjct  529  CCCTTTG  535


> AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits 
to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa 
- 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes 
- 62 (source: NCBI BLink). | chr5:24473319-24474491 
REVERSE LENGTH=815
Length=815

 Score =  110 bits (59),  Expect = 2e-23
 Identities = 67/71 (94%), Gaps = 0/71 (0%)
 Strand=Plus/Minus

Query  6    TCTTCTTCTTCTTCGATGCATTGTGGCGGGTCTAGAAACGAAGCATCCGGGTCTGCATAC  65
            |||||||||||  | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  496  TCTTCTTCTTCAACAATGCATTGTGGCGGGTCTACAAACGAAGCATCCGGGTCTGCATAC  437

Query  66   CAACGTGCACA  76
            |||||||||||
Sbjct  436  CAACGTGCACA  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5