BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951944
Length=245
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper ... 375 7e-104
> AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper
70 | chr5:24472639-24473319 FORWARD LENGTH=621
Length=621
Score = 375 bits (203), Expect = 7e-104
Identities = 232/246 (94%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 1 GAATATGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAAATCGAAGAGCTGCAACAACAA 60
|||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA 300
Query 61 GTTGAACAGCTCATGATGTTGAATCATCACTTG-CATGAGAAAGTCATCAACTTGTTGGA 119
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 301 GTTGAACAACTCATGATGTTGAATCATCACTTGTC-TGAGAAAGTCATCAACTTGTTGGA 359
Query 120 AAGCAACCACCAAATCCTGCACGAGAACTCACAGCTGAAAGAGAAAGCCTCTTCCTTTCA 179
||||||||| || ||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 360 AAGCAACCATCAGATCCTACAAGAGAACTCACAGCTGAAAGAGAAAGTCTCTTCCTTTCA 419
Query 180 CTTGCTCATGGCAGATGTGTTATTACCCATGAGAAATGCATAGAGCAATATCAATGACCG 239
||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 420 CTTGCTCATGGCAGATGTGCTATTACCCATGAGAAATGCAGAGAGCAACATCAATGACCG 479
Query 240 CAATGT 245
||||||
Sbjct 480 CAATGT 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11109172529
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5