BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951946

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper ...   462    7e-130


> AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper 
70 | chr5:24472639-24473319 FORWARD LENGTH=621
Length=621

 Score =  462 bits (250),  Expect = 7e-130
 Identities = 281/296 (95%), Gaps = 2/296 (1%)
 Strand=Plus/Plus

Query  1    GAATATGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA  60
            |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA  300

Query  61   GTTAAACAGCTCATGATGTTGAATCATCACTTG-CATGAGAAAGTCATCAACTTGTTGGA  119
            ||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct  301  GTTGAACAACTCATGATGTTGAATCATCACTTGTC-TGAGAAAGTCATCAACTTGTTGGA  359

Query  120  AAGCAACCACCAAATCCTGCACGAGAACTCACAGCTGAAAGAGAAAGCCTCTTCCTTTCA  179
            ||||||||| || ||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct  360  AAGCAACCATCAGATCCTACAAGAGAACTCACAGCTGAAAGAGAAAGTCTCTTCCTTTCA  419

Query  180  CTTGCTCATGGCAGATGTGTTATTACCCATGAGTAATGCAGAGAGCAATATCAATGACCG  239
            ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct  420  CTTGCTCATGGCAGATGTGCTATTACCCATGAGAAATGCAGAGAGCAACATCAATGACCG  479

Query  240  CAATGTGAATTATCTAAGAGGAGAAACATCAAACCGTCCCACCAACAGTCCCTTTG  295
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  480  CAATGTGAATTATCTAAGAGGAGAACCATCAAACCGTCCCACCAACAGTCCCTTTG  535



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5