BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951957
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82, su... 2276 0.0
> AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82,
subfamily G, polypeptide 1 | chr3:9167285-9169282 REVERSE LENGTH=1718
Length=1718
Score = 2276 bits (1232), Expect = 0.0
Identities = 1427/1521 (94%), Gaps = 14/1521 (1%)
Strand=Plus/Plus
Query 20 CATGATTTTTCTCTTTAGTACTCTCCAATTTTCTCTCTTCTCTTTGGCCCTTGTAATCGC 79
||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 12 CATGACTTTTCTCTTTAGTACTCTCCAGTTGTCTCTCTTCTCTTTGGCCCTTGTAATCTT 71
Query 80 CGGTTACATTTTCCTCGGaaaaaaaTTGAGTAAAGGTGAAGTTGATA-CTTCCACCATCC 138
||||||||||||||| ||||| ||||||||| | |||||||||||| | ||||| || |
Sbjct 72 TGGTTACATTTTCCTCAGAAAACAATTGAGTAGATGTGAAGTTGATAGC-TCCACGATTC 130
Query 139 CTGAGCCATTAGGAGCTTTGCTTCTATTCGGCCACCTCCATCTATTGCGCGGCAAAAAAC 198
|||||||||| |||||||||| ||||||||| ||||||||||| ||||| ||||||||||
Sbjct 131 CTGAGCCATTGGGAGCTTTGCCTCTATTCGGACACCTCCATCTTTTGCGTGGCAAAAAAC 190
Query 199 TCATTTGCAAGAAACTAGCTGCCATATCCGAAAAACATGGTCCTATCTTCTCCCTCAAGT 258
|| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 191 TCCTTTGCAAGAAATTAGCTGCCATGTCCCAAAAACATGGTCCTATCTTCTCCCTCAAGT 250
Query 259 TAGGGTCTTATAGGCTGGTTGTGGCCAGCGACCCAAAAACGGTGAAAGAATGTTTCACCA 318
|||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 251 TAGGGTTTTATAGGCTGGTTGTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTTCACCA 310
Query 319 CCAACGACTTGGCT-CTAGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTAGGCTAC 377
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CCAACGACTTGGCTAC-AGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTAGGCTAC 369
Query 378 AACAATGCAAGTCTAACACTGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTAAGATT 437
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AACAATGCAAGTCTGACTCTGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTAAGATT 429
Query 438 GTCACCGTCCATCTATTCTCAAACCAGAGTATAGAGATGCTTGGTCACATTCGTTCTTCA 497
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 430 GTCACCGTCCATCTATTCTCAAACCACAGTATAGAGATGCTTGGTCACATTCGTTCTTCA 489
Query 498 GGAAAGATCCCAATA--TTTATCAAACACCTATACAAAGGGAGTGGTGGAACTTCTATAG 555
| ||| | || | || |||||||||||||||||||||| |||||||||||||||||
Sbjct 490 -G-AAG-T--AAACACGTTGATCAAACACCTATACAAAGGGAATGGTGGAACTTCTATAG 544
Query 556 TGAAGATTGACATGTTATTCGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGG 615
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGAAGATTGACATGTTATTTGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGG 604
Query 616 GGAAGAGAATTGGTTTCGGTGAAGTGAATAGCGAGGAATGGCGTTATAAGGAGTCCCTGA 675
||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 605 GGAAGAGGATTGGTTTCGGTGAAGTGAATAGCGATGAATGGCGTTATAAGGAGGCCCTGA 664
Query 676 AGCATTGCGAGTTCTTGGCTGTGATTCCTATGATAGGCGACGTTATTCCATGGCTAGGAT 735
|||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 665 AGCATTGCGAGTACTTGGCTGTGATTCCTATGATAGGCGACGTTATTCCATGGTTGGGAT 724
Query 736 GGTTGGATTTTGCAAAAATTTCTCAAATGAAGAGATTATTTAAGGAGCTTGACTCAGTCA 795
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 725 GGTTGGATTTTGCAAAAAATTCTCAAATGAAGAGACTATTTAAGGAGCTTGACTCAGTCA 784
Query 796 ACACCAAGTGGCTCCAAGAACATCTCAAGAAGAGATCAAGAAATGAGAAAGATCAAGAAA 855
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 785 ACACCAAGTGGCTCCACGAACATCTCAAGAAGAGATCAAGAAATGAGAAGGATCAAGAAA 844
Query 856 GAACAATCATGGATCTACTGCTCGACATCTTACCAGAAGATATTGTGATAAGTGGACATG 915
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 845 GAACAATCATGGATCTACTGCTAGACATCTTACCAGAGGATATTGTGATAAGTGGACACG 904
Query 916 TACGCGATGTCATTGTGAAGGCAACGATTTTGGCTCTCACATTAACGGGATCAGACAGCA 975
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 905 TACGCGATGTCATTGTGAAGGCAACAATTTTGGCTCTCACATTAACAGGATCAGACAGCA 964
Query 976 CATCCATCACTTTGACATGGGCAGTATCGCTACTACTCAACAATCCTGCTACTTTAAAAG 1035
|||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||| |||
Sbjct 965 CATCCATCACTTTGACATGGGCGGTATCGCTGCTACTCAACAATCCAGCTGCTTTAGAAG 1024
Query 1036 CAGCACAAGAAGAGATTGACAATTGTGTCGGGAAACGTAGATGGGTTGAAGAATCCGACG 1095
||||||||||||||||||| ||| ||||||| ||| |||||||| |||||||||||||
Sbjct 1025 CAGCACAAGAAGAGATTGATAATAGTGTCGGCAAAGGTAGATGGATTGAAGAATCCGATA 1084
Query 1096 TACAAAACCTTAAGTACCTACAAGCTATTGTTAAGGAAACTCACCGACTTTACCCGCCAG 1155
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1085 TACAAAACCTCAAGTACCTACAAGCTATTGTTAAGGAAACGCACCGACTTTACCCGCCGG 1144
Query 1156 CTCCTCTTACAGGAATCCGCGAAGCACGTGAAGATTGTTTTGTGGGAGGATACCGTGTTG 1215
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1145 CTCCTCTAACAGGAATCCGCGAAGCACGTGAAGATTGTTTCGTGGGAGGATACCGTGTTG 1204
Query 1216 AGAAAGGCACACGCTTGCTCGTCAACATTTGGAAACTTCATAGGGACCCCAAGATCTGGC 1275
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 1205 AGAAAGGCACACGCTTGCTCGTAAACATATGGAAACTTCATAGGGATCCCAAGATCTGGC 1264
Query 1276 TTGACCCCAAAACCTTTAAGCCTGAGAGGTTCATGGAGGAGAAATTACAATGTGAAAAGA 1335
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1265 CTGACCCCAAAACCTTTAAGCCTGAGAGGTTCATGGAGGATAAATCACAATGTGAAAAGA 1324
Query 1336 GCGACTTTGAATACATTCCTTTTGGTTCGGGAAGAAGGTCGTGTCCGGG-GATCAATCTT 1394
|| ||||||||||||||||||| ||||||||||| |||||||||||||| | ||||||||
Sbjct 1325 GCAACTTTGAATACATTCCTTTCGGTTCGGGAAGGAGGTCGTGTCCGGGAG-TCAATCTT 1383
Query 1395 GGTCTAAGAGTTGTACACTTCGTGTTGGCTCGATTGCTTCAAGGCTTTGAGTTACGCAAA 1454
|||||||||||||||||||| || |||||| ||||||||||||| |||||||||| ||||
Sbjct 1384 GGTCTAAGAGTTGTACACTTTGTATTGGCTAGATTGCTTCAAGGGTTTGAGTTACACAAA 1443
Query 1455 GTGTCTGATGAACCAGTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAAAGATTAA 1514
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1444 GTGTCTGATGAACCACTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAA-GATTAA 1502
Query 1515 CCCGGTCGAAGTTGTTGTAAT 1535
|||||||||||| ||||||||
Sbjct 1503 CCCGGTCGAAGTAGTTGTAAT 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75752622405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5