BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951958

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27880.1 | Symbols:  | DEAD/DEAH box RNA helicase family pro...   617    3e-176


> AT1G27880.1 | Symbols:  | DEAD/DEAH box RNA helicase family protein 
 | chr1:9708924-9714089 FORWARD LENGTH=2940
Length=2940

 Score =  617 bits (334),  Expect = 3e-176
 Identities = 382/406 (94%), Gaps = 0/406 (0%)
 Strand=Plus/Plus

Query  9     TTGGTTTCGCTCATGATCGATCAGTTGAAGCATTTGCCTTCAATTATTAAGGGTGGTCTC  68
             ||||||||| | ||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct  968   TTGGTTTCGTTGATGATTGATCAGTTGAAGCATTTGCCTTCTATCATTAAGGGTGGTCTC  1027

Query  69    TTGAGCAGTAGCCAGAGACCAGAGGAAGCAACAGAGACATTGCGGAAACTTAAAGAAGGC  128
             |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  1028  TTGAGCAGTAGCCAGAGACCTGAGGAAGCAACGGAGACATTGCGGAAACTTAAAGAAGGC  1087

Query  129   ATAATAAAGGTTCTCTTTGTATCTCCCGAGAGACTTCTGAATCTAGAATTTCTGTCAATG  188
             |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||
Sbjct  1088  ATAATAAAGGTTCTCTTTGTATCTCCTGAGAGACTTCTGAATGTAGAATTTTTGTCAATG  1147

Query  189   TTTCGCTTGTCTTTATCTGTGTCACTTGTAGTCGTGGATGAGGCGCACTGCATATCAGAA  248
             |||||| |||||||||||||||||||||| || || |||||||| |||||| ||||||||
Sbjct  1148  TTTCGCATGTCTTTATCTGTGTCACTTGTCGTGGTTGATGAGGCACACTGCGTATCAGAA  1207

Query  249   TGGTCTCATAACTTCCGCCCTTCATACATGAGACTCAAGGCATCAATGCGGTTTTCTGAA  308
             ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct  1208  TGGTCTCATAACTTCCGTCCTTCATATATGAGACTCAAGGCATCAATGCTGTTTTCTGAA  1267

Query  309   CTCAAGGCAGAATGCATTCTCGCGATGACTGCAACAGCCACTACTATGACTCTTGAGGCT  368
             ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||
Sbjct  1268  CTCAAGGCAGAATGCATTCTCGCGATGACCGCAACTGCCACTACAATGACTCTTCAGGCT  1327

Query  369   GTCATGTCTGCACTAGAGATACCGTCAACCAATCTTATTCAGAAGT  414
             ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1328  GTCATGTCTTCACTAGAGATACCGTCAACCAATCTTATTCAGAAGT  1373



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27025971086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5