BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951982

Length=710
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53680.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   313    2e-84


> AT5G53680.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:21798382-21799109 FORWARD LENGTH=510
Length=510

 Score =  313 bits (169),  Expect = 2e-84
 Identities = 257/299 (86%), Gaps = 7/299 (2%)
 Strand=Plus/Plus

Query  21   ATGTCTCA--A-CACGGAAACTTCGATACAACGTTCACAAAGATATTCGTGGAAAATTTG  77
            ||||||||  | |||  ||||||||||||||| ||||||||||||| |||||    ||||
Sbjct  1    ATGTCTCACCACCACCAAAACTTCGATACAACATTCACAAAGATATACGTGGGGGGTTTG  60

Query  78   CCTTGGACAACAAGACAGGAAGGCTTGGTAAACTTCTTCAAACGTTTTGGAGAGATTATC  137
            ||||||||||||||| ||||||||||| |||||||||||||||||||||| || || |||
Sbjct  61   CCTTGGACAACAAGAAAGGAAGGCTTGATAAACTTCTTCAAACGTTTTGGTGAAATCATC  120

Query  138  CGTGCT-AACGTCGTTTTTTATaaaaaaaCAGACCGATCACAAGGCTATGGCTTTGTGAC  196
            | || | |||||||||| | ||| | ||||||| ||||||||||| |||||||| || ||
Sbjct  121  CATG-TGAACGTCGTTTGTGATAGAGAAACAGATCGATCACAAGGATATGGCTTCGTCAC  179

Query  197  GTTTAGAGATGCTGAATCCGCAAGAA-ACGCTTGCAAGAATCCGAATCCGACAATAGACG  255
            ||||| ||| |||||||| |||| || | ||||||||| ||||||||||||| || || |
Sbjct  180  GTTTAAAGACGCTGAATCTGCAACAAGA-GCTTGCAAGGATCCGAATCCGACTATTGAAG  238

Query  256  GACGAGTGACCAATTGCAAACTCGCTTCCCTTGGTGCTAAAGTTAAACCTAACCAATCC  314
            ||||| | || |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct  239  GACGAATAACTAATTGCAAACTCGCTTTCGTTGGTGCTAAAGTTAAACCTAACCAATCC  297



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34410390695


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5