BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951993

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42092.1 | Symbols:  | Potential natural antisense gene, loc...   163    5e-40
  AT5G42090.1 | Symbols:  | Lung seven transmembrane receptor fam...   163    5e-40


> AT5G42092.1 | Symbols:  | Potential natural antisense gene, locus 
overlaps with AT5G42090 | chr5:16826838-16827583 REVERSE 
LENGTH=493
Length=493

 Score =  163 bits (88),  Expect = 5e-40
 Identities = 110/121 (91%), Gaps = 0/121 (0%)
 Strand=Plus/Minus

Query  49   GTCGAATCATCCCTTTAGACGAATTCGGTTTCACTCACATCGGTCGCCTCGAGCTCGACG  108
            ||| ||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||
Sbjct  398  GTCCAATCATCCCTTTAGACGAATTCGGTTTCACTCACAGCGGTCGTCTTGAGCTTGACG  339

Query  109  CCTCCAAGATCTCGCTTTCCAACCCCAATCCCGATCTGGATCTCTCCAAAGTCGGCTTCT  168
            | |||||||||| ||||||||||  |||||||||||| |||||||||||||| |||||||
Sbjct  338  CTTCCAAGATCTGGCTTTCCAACAGCAATCCCGATCTCGATCTCTCCAAAGTGGGCTTCT  279

Query  169  T  169
            |
Sbjct  278  T  278


> AT5G42090.1 | Symbols:  | Lung seven transmembrane receptor family 
protein | chr5:16826698-16828454 FORWARD LENGTH=1757
Length=1757

 Score =  163 bits (88),  Expect = 5e-40
 Identities = 110/121 (91%), Gaps = 0/121 (0%)
 Strand=Plus/Plus

Query  49   GTCGAATCATCCCTTTAGACGAATTCGGTTTCACTCACATCGGTCGCCTCGAGCTCGACG  108
            ||| ||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||
Sbjct  236  GTCCAATCATCCCTTTAGACGAATTCGGTTTCACTCACAGCGGTCGTCTTGAGCTTGACG  295

Query  109  CCTCCAAGATCTCGCTTTCCAACCCCAATCCCGATCTGGATCTCTCCAAAGTCGGCTTCT  168
            | |||||||||| ||||||||||  |||||||||||| |||||||||||||| |||||||
Sbjct  296  CTTCCAAGATCTGGCTTTCCAACAGCAATCCCGATCTCGATCTCTCCAAAGTGGGCTTCT  355

Query  169  T  169
            |
Sbjct  356  T  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9550872310


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5