BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951995
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14030.1 | Symbols: | F-box associated ubiquitination effec... 279 1e-74
AT3G13624.1 | Symbols: | pseudogene, hypothetical protein | ch... 178 5e-44
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 63.9 2e-09
> AT3G14030.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:4646272-4647124 REVERSE LENGTH=756
Length=756
Score = 279 bits (151), Expect = 1e-74
Identities = 192/211 (91%), Gaps = 5/211 (2%)
Strand=Plus/Plus
Query 297 CTGGGAGTTTTCTTTATTGATGACGAGAAGAAAGTCGCCGTGGTTTTCGATCTAGACGGA 356
||||||| ||||||| |||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 539 CTGGGAG-TTTCTTTGTTGACGAGGAGAAGAAAGTCGCCATGGTTTTCGATCTAGACGGA 597
Query 357 TATAAAAAGACCGAGACTTGTCGCTACCAAACAGCTCACATCATTGGACAATATGGATAC 416
|||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 598 CGTAAAAAGACCGAGACTTGCCGCTACCAGACAGCTCACATCATTGGACAAGATGGATAC 657
Query 417 TTCAAATCTGTGAATATCCGAGAAGCTCCGAATCTCGGGAAACCTGACCAGATTTGGATT 476
|||||||||||||||||||||||||| | ||||||||||||||||||| | ||||||||
Sbjct 658 TTCAAATCTGTGAATATCCGAGAAGCACAGAATCTCGGGAAACCTGAC-ATATTTGGATA 716
Query 477 TTACTCTCT-CCATTTATTGTGTCCCACTTG 506
|||| || |||||||||||||||||||||
Sbjct 717 C-ACTC-CTTCCATTTATTGTGTCCCACTTG 745
Score = 156 bits (84), Expect = 2e-37
Identities = 133/154 (86%), Gaps = 14/154 (9%)
Strand=Plus/Plus
Query 155 CGACGTAGATACCACACATCTTCCCGTTATTCTACTCTGTTTTGATTTTACAGCAGAGAG 214
|||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 249 CGACGTAGATACAACGTATCTTCCAGTTTTTCTACTCTGTTTTGATTTTACAGCAGAGAG 308
Query 215 ATTTGGACCGCGTCTTCCTCTACCGTTTCACTCTCATGAT---------GA--A-GAGAT 262
||||||||||||||||||||| |||||||||||||||||| || | |||||
Sbjct 309 ATTTGGACCGCGTCTTCCTCTTCCGTTTCACTCTCATGATAACTCTCATGATGAAGAGAT 368
Query 263 TGTGTCTCTAT-CTTGTGTCAAAGAAGAGCAGCT 295
||||||||||| || |||||||||| ||||||||
Sbjct 369 TGTGTCTCTATTCT-GTGTCAAAGAGGAGCAGCT 401
> AT3G13624.1 | Symbols: | pseudogene, hypothetical protein |
chr3:4454219-4456010 REVERSE LENGTH=1792
Length=1792
Score = 178 bits (96), Expect = 5e-44
Identities = 195/241 (81%), Gaps = 13/241 (5%)
Strand=Plus/Plus
Query 297 CTGGGAGTTTTCTTTATTGATGACGAGAAGAAAGTCGCCGTGGTTTTCGATCTAGACGGA 356
||||||| |||||| ||| | || ||||| |||| || |||||||||||||| |||| |
Sbjct 1515 CTGGGAG-TTTCTTCATTAACGAGGAGAATCAAGTGGCTGTGGTTTTCGATCTTGACGAA 1573
Query 357 TATAAAAAGACCGAGACTTGTCGCTACCAAACAGCTCACATCATTGGACAATATGGATAC 416
|||||| || ||||| |||||| ||||||||||| |||| || |||||| ||| ||||
Sbjct 1574 TATAAAGGGAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATAC 1633
Query 417 TTCAAATCTGTGAATATCCGAGAAGCTCCGAATCTCGGGAAACCTGACCAGATTTGGATT 476
||||||||||||||||| | || |||||||||||| || || |||| || | | |
Sbjct 1634 TTCAAATCTGTGAATATTGGGGAGGCTCCGAATCTC-GG-AA---GACCTGA---GAAAT 1685
Query 477 TTACTCTCTC-CATTTATTGT-GTCCCACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGT 534
| ||| | | ||| |||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 1686 ATGCTC-CACACATATATTGTCG-CCCACTTGTGTGCTCTTCTTATGTTCCAAGCTTAGT 1743
Query 535 G 535
|
Sbjct 1744 G 1744
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 63.9 bits (34), Expect = 2e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 502 ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTG 535
||||||||||||||||||||||||||||||||||
Sbjct 1990 ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTG 2023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5