BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951997

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15410.1 | Symbols: DND1, ATCNGC2, CNGC2 | Cyclic nucleotide...   148    3e-35


> AT5G15410.1 | Symbols: DND1, ATCNGC2, CNGC2 | Cyclic nucleotide-regulated 
ion channel family protein | chr5:5003307-5006882 
REVERSE LENGTH=2453
Length=2453

 Score =  148 bits (80),  Expect = 3e-35
 Identities = 211/268 (79%), Gaps = 33/268 (12%)
 Strand=Plus/Plus

Query  5    TTGCTTCTAACTCGAGGGATGGCTTTAGCGGTGGATCTGCTCTTCTTCTACACACTCTCT  64
            |||||| || |||| |||||||||||||||||||||| ||||||||||||| | || || 
Sbjct  501  TTGCTTTTAGCTCGTGGGATGGCTTTAGCGGTGGATCCGCTCTTCTTCTACGCGCTTTCC  560

Query  65   ATCGGTCGAACCACCGGACCAACGTGTCTTCACATGGACGGTGCATT---CGC---GG--  116
            ||||| ||||| ||||||||  |||||||| ||||||| ||||| ||   |||   ||  
Sbjct  561  ATCGGCCGAACTACCGGACCGGCGTGTCTTTACATGGATGGTGCGTTCGCCGCGGTGGTC  620

Query  117  -CGGTGGT---CACATG--T-G--GC--TTCA--ATT--CACATGTGGCTTCAA-T----  156
             ||||| |   ||| ||  | |  ||  ||||   ||  ||| ||||||||||| |    
Sbjct  621  ACGGTGCTCCGCACGTGTCTCGATGCTGTTCATCTTTGGCACGTGTGGCTTCAATTCAGA  680

Query  157  -T----TACGTCTCCCGAGATTCGCTTGTCGTTGGTTGTGGCAAGCTCGTTTGGGATCCA  211
             |    ||||||||  |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  681  CTGGCCTACGTCTCGAGAGAGTCGCTTGTCGTTGGTTGTGGGAAGCTCGTTTGGGATCCA  740

Query  212  CGCGCCATCGCGTCTTACTACGCACGCT  239
            ||||||||||||||| ||||||||||||
Sbjct  741  CGCGCCATCGCGTCTCACTACGCACGCT  768



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17191570158


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5