BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952002

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04160.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   300    6e-81


> AT3G04160.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature 
embryo stage, petal differentiation and expansion stage, 
E expanded cotyledon stage, D bilateral stage. | chr3:1091147-1094346 
REVERSE LENGTH=2610
Length=2610

 Score =  300 bits (162),  Expect = 6e-81
 Identities = 207/228 (91%), Gaps = 6/228 (3%)
 Strand=Plus/Plus

Query  6    CCGTCGCCGGAACTCATGGATCGACCACCGTCGTTTCCACACTATCAAATCCCTAATCCG  65
            ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct  36   CCGTCGCCGGAACTCATGGATCGACCACCGTCGTTGCCACACTATCAAAACCCTAATCCG  95

Query  66   AACTTGTT-TCATCACGT-TCCTCCTCCAAACCCTAATCCTAATTTCTTCGTCCGACCTC  123
            ||| | || | | ||| | ||||||||||||  ||||||||||||||||| |||||||||
Sbjct  96   AACCTCTTCT-ACCAC-TATCCTCCTCCAAATTCTAATCCTAATTTCTTCTTCCGACCTC  153

Query  124  CTCTAGCTCATCTTCAAAATCCTAACAATTACTCCATCG--CCGTCTCCGCCGCCGATTT  181
            ||| | ||| |||||||||||||||||||||||||||||  |||||||||||||||||| 
Sbjct  154  CTCCACCTCCTCTTCAAAATCCTAACAATTACTCCATCGTTCCGTCTCCGCCGCCGATTC  213

Query  182  GCGAGCTCTCCGGTACAATCTCTTCTTTACAATCCCTGTTGTCGGAAT  229
            ||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct  214  GCGAGCTCTCCGGTACACTCTCTTCTTTAAAATCCCTGTTGTCAGAAT  261



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5