BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952004

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48630.2 | Symbols:  | Cyclin family protein | chr5:19721503...   512    1e-144


> AT5G48630.2 | Symbols:  | Cyclin family protein | chr5:19721503-19723168 
REVERSE LENGTH=980
Length=980

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 308/323 (95%), Gaps = 1/323 (0%)
 Strand=Plus/Plus

Query  99   TATATATCGAAACTGGCACAACACATAAAGATTAGGCAAAGAGTTATTGCAACTGCAGTA  158
            |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct  197  TATATATCGAAACTGGCACAACACATTAAGATTAGGCAAAGAGTTGTTGCAACTGCAGTA  256

Query  159  ACGTATATGCGTCGCGTTTACACAAGAAAGAGTTTGTCGGAATACGAGCCTCGGCTTGTT  218
            || ||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct  257  ACCTATATGCGTCGTGTTTACACAAGAAAGAGTTTGACGGAATATGAGCCTCGGCTTGTT  316

Query  219  GCTCCCACCTGCTTGTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTT  278
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  317  GCTCCTACATGCTTGTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTT  376

Query  279  CTTGTCTTCTACATGAAAAAACTTTATGCTGATGAAAAGTTTAGATATGAGATCAAAGAT  338
            ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct  377  CTTGTCTTCTACATGAAAAAACTTTATGCGGATGAAAAGTTTCGATATGAGATTAAAGAT  436

Query  339  ATTCTGGAAATGGAGATGAAGGTCTTGGAAGCTTTGAACTTCTATCTTGTTGTATTCCAC  398
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  437  ATTCTGGAAATGGAGATGAAGGTCTTGGAAGCATTGAACTTCTATCTTGTTGTATTCCAC  496

Query  399  CCATACCGATCTCTTCACTGAGT  421
            ||||| |||||||| | ||||||
Sbjct  497  CCATATCGATCTCTGC-CTGAGT  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20911383584


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5