BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952005
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04990.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 920 0.0
> AT3G04990.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Frigida-like protein (TAIR:AT5G27220.1); Has 30900
Blast hits to 17560 proteins in 1427 species: Archae - 757;
Bacteria - 4112; Metazoa - 14311; Fungi - 2221; Plants - 1348;
Viruses - 71; Other Eukaryotes - 8080 (source: NCBI BLink).
| chr3:1383996-1384679 REVERSE LENGTH=684
Length=684
Score = 920 bits (498), Expect = 0.0
Identities = 620/678 (91%), Gaps = 12/678 (2%)
Strand=Plus/Plus
Query 24 ATGGAGAAACTCAAAGCTGATGCTTCCGAAATAATCATCTACGTCC-GTCAATTGAAAGG 82
|||||||||||||||||||||||| |||||||||| |||| || || ||||| |||||||
Sbjct 1 ATGGAGAAACTCAAAGCTGATGCTGCCGAAATAATGATCTGCG-CCGGTCAACTGAAAGG 59
Query 83 TTTACTCAACCATATTG-GCATGGCTGAAGCGAACATTGAGAAGAGGTCTCGAGAGCTGG 141
||||||||||||| ||| |||||| |||||| |||||||||||||| ||||||||||| |
Sbjct 60 TTTACTCAACCAT-TTGCGCATGGGTGAAGCCAACATTGAGAAGAGCTCTCGAGAGCTAG 118
Query 142 ATTTAAAGGAGGAGGAGCTGCAAATTTTGAGCTCAGACCTTGAGCAAAAGAGTCAAACTT 201
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 ATTTAAAGGAGAAGGAGCTGCAAATTTTGAGCTCAGACCTTGAGCAAAAGAGTCATGCTT 178
Query 202 TTGAAGCAGA-AAAGTCTGAAGCTGGTGATTTGAAGAAATTGGTGGAAGAGTGTACTGAA 260
|||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 TTGAAGCAGAGAAA-TCTGAAGTTGGTGATTTGAAGAAATTGGTGGAAGAGTGTACTGAA 237
Query 261 GAACTGAGGTCAAAGAGGAATCTACTGACTGTGAGGCTCGATTCTTTGACAAGGGTTCAG 320
|||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||
Sbjct 238 GAACTGAGGTCAAAGAGGAATCTACTGACTGTGAAGCTGGATTCGTTGATAAGGGTTCAG 297
Query 321 AGAGAGCTTGAGTCAAAGGATAACCAATTGGGACAGGTTATGGCCGAGATTAAGAGGCGT 380
||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 298 AGAGAGCTTGAGTTAAAGGATAACCAATTGGTACAGGTTATGGCTGAGCTTAAGAGGCGT 357
Query 381 TGCACTGAGGCTCGTAATGTTCAAGAGCGTAAGAGAGAAGTGGAAGATGAAACAGCTTCA 440
| || |||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 358 TACAGTGAGGCTCGTCATGTTCAAAAGCGTAAGAGAGAAATGGAAGATGAAACAGCTACA 417
Query 441 AAGAAGAAAGAGTTGTC-ACTGATTGTTGAGCAGAT-CGAAGAATCTGACAAACAGCTTG 498
|| |||||||||||||| | ||| |||||| ||||| | ||||||||| |||||||||||
Sbjct 418 AAAAAGAAAGAGTTGTCTA-TGACTGTTGACCAGATTC-AAGAATCTGGCAAACAGCTTG 475
Query 499 AGAACAAGTCTCGAGAAGTAGAATTGAAGGAGAAGGACATTGAAGAGAACAG-AAAAGAA 557
|||| |||||||| || ||||| |||||||| || || ||||||||||| || |||||||
Sbjct 476 AGAAGAAGTCTCGGGAGGTAGAGTTGAAGGATAAAGAGATTGAAGAGAA-AGGAAAAGAA 534
Query 558 CTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGGAAACTCATTCAGCTTAGGAAA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 535 CTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGGAAACTCATTCAGCTGAGTAAA 594
Query 618 TTGGTTGATGATGATTGTACAAGAGAACTACGTCCAAGGAAAGATCATGAGGATTCATCG 677
|||||||||||||||||||| | ||||||| |||| ||||||||||| | ||||||||||
Sbjct 595 TTGGTTGATGATGATTGTACTACAGAACTAAGTCCGAGGAAAGATCAAGTGGATTCATCG 654
Query 678 AACAACACTCATGTGAAA 695
||||||||| ||||||||
Sbjct 655 AACAACACTTATGTGAAA 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5