BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952006
Length=3748
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04980.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 2641 0.0
> AT3G04980.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr3:1378684-1382181 REVERSE LENGTH=3498
Length=3498
Score = 2641 bits (1430), Expect = 0.0
Identities = 1937/2167 (89%), Gaps = 93/2167 (4%)
Strand=Plus/Plus
Query 1 ACAGATACAGATCCCATTCAATGCTTGCTAAAAAGCAAGTGCATGCATACTCGGGTCGCC 60
||||||||||||||||||||||| ||||||| | ||| ||| ||| ||||||||||||||
Sbjct 329 ACAGATACAGATCCCATTCAATGTTTGCTAACAGGCATGTGAATGTATACTCGGGTCGCC 388
Query 61 ACTGTGCAGCTACAAACAATGATGCAGAGAATATTGCAAGTGTTTACACATTCTGGACAC 120
||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||
Sbjct 389 ACTGTGCAGCTACAAACAATGCTGCGGAGAATATTGCTGGTGTTTTCACATTCTGGACAC 448
Query 121 GTTGCAGGCACTGTGGCCAGTGGTATAAATACTTGAGAAAATATATAAATACAGT-TATG 179
|||||||||||||||||||||| ||||||||||||||| ||||||| || || | ||||
Sbjct 449 GTTGCAGGCACTGTGGCCAGTGTTATAAATACTTGAGAGAATATATGAACAC-TTCTATG 507
Query 180 TACTGTTCCAGTTGCCGGAAATCTTATGTCGCCTGCAACATGAGGTGTGATGGAGTGCCA 239
||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||
Sbjct 508 CACTGTTCCAGTTGCCAGAAATCTTTTGTCGCCTGCAAAATGAGGTGTGATGGAGTGCCA 567
Query 240 CCTAGTAGTTCAACTGCTGGCAGAAAGGAATTTCAATATCAAGGGATGTATAATACATCT 299
|||||||||||||| ||||| ||||| ||||| ||| |||||| ||||| |||| |
Sbjct 568 CCTAGTAGTTCAACCGCTGGTAGAAAAGAATTCCAAGATCAAGTGATGTCTAAT--A--- 622
Query 300 CGGCAAAAATCTCGGCAAAATGCTTCTACAGGAGCAGAATCAGGCGGTTCAGCAGCTGAG 359
| ||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 623 ---C----ATCTCGGCAAAATGCTTCTACAGCAGCAGAATCAGGCAGCTCAGCAGCTGAT 675
Query 360 ATGGGTAAGAATGGGACAGCT-Ggaaagaaactcaacaagaagaatcaagaaaaacagaa 418
|||||||||||||||| || | ||| |||| ||||||||||||||||||||||||||||
Sbjct 676 ATGGGTAAGAATGGGAAAG-TCGGAGGGAAAGTCAACAAGAAGAATCAAGAAAAACAGAA 734
Query 419 aaaagGTGCTGCTAACA-GGGAACCCAAGAAAGACGAGGGTTGTACAGAGAATGACGCTG 477
||| ||||||| ||||| ||||| | |||||||| || ||||||||||||||||||||||
Sbjct 735 AAATGGTGCTGTTAACAGGGGAA-CTAAGAAAGAAGAAGGTTGTACAGAGAATGACGCTG 793
Query 478 AAGGAAGAAACCCCCAGAATAGTGAGACAGGTACGAATAATTCTGCTGAAATACCTAAGG 537
|||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||| |
Sbjct 794 AAGGAAGAAAACCCCAGACTAGTGAGACAGGTACGAATATTTCTGCTGAAATGCCTAAAG 853
Query 538 CTGATGTATTGAAGCCGCAGCATCAAGT--AA-AAGAACCACTTATTAG-G--GCAAAGT 591
||||||||||||||||||| |||||||| || |||||||| || ||| | | |||||
Sbjct 854 CTGATGTATTGAAGCCGCAACATCAAGTAAAAGAAGAACCAGATACTAGTGCAGAAAAGT 913
Query 592 CAATACCTGATTTATCAGCTCCAAAGAAGAACCAGGCAGCCAAAAAGAAGAGAAAAGCTG 651
||||||||||||||||||||||| ||||||| | |||| ||||||||||||| |||| ||
Sbjct 914 CAATACCTGATTTATCAGCTCCACAGAAGAATCGGGCACCCAAAAAGAAGAGGAAAGTTG 973
Query 652 TTGAGGAATCCTCTAAAAGTTTTGAGGTTGATAG--C---T-CTGCTGGGGCTAAAACAG 705
|||| ||||||||||| ||||||||||||||||| | | ||||||||||||||||||
Sbjct 974 TTGAAGAATCCTCTAAGAGTTTTGAGGTTGATAGCTCTGATACTGCTGGGGCTAAAACAG 1033
Query 706 ATACACATGAATATAATAAGAGGAAGTCATCGAGGAAAAAGCCACAGGTTTTTTGCACAA 765
||||| ||||| ||||||||||||||||||| ||||||||||||||||||| || | |||
Sbjct 1034 ATACAAATGAACATAATAAGAGGAAGTCATCAAGGAAAAAGCCACAGGTTTCTTACGCAA 1093
Query 766 AGG-GTGGAAGAGATGGTGATTTTGTCAGCCCTCCAAATAAAAAGACAAAATCAGGTTGT 824
||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1094 AGGAG-GGAAGCGATGGTGATTTTGTCAGCCCTCCAAATAAAAAGACAAAATCAGGTTTT 1152
Query 825 GAATTCGAGTCTGAGTTTGATACGAAGCAAACGGCTGAGGATAATCAGT---C---A-T- 876
||||| ||||||||| | ||| |||||||||||||||||||||| ||| | | |
Sbjct 1153 GAATTTGAGTCTGAGCCTAATAAGAAGCAAACGGCTGAGGATAATAAGTCACCTAAACTG 1212
Query 877 -CTG-AACT-G-G------CTGATTC-T--C---CTTATAAAGGAAAGGCCAAGAAAAAC 920
||| || | | ||| ||| | | |||||||||||||||||||||||||
Sbjct 1213 GCTGTTTCTGGTGTTTCTTCTGCTTCTTCACATTCTTATAAAGGAAAGGCCAAGAAAAAT 1272
Query 921 GTGCATTCTGGAAATGAAGA-AATCTTGTCATG-CAAAAACAAAGTTTGTGAAGGCTGTG 978
| |||||||||||||||||| || ||||||| | ||||||||||||| ||||||||||||
Sbjct 1273 GCGCATTCTGGAAATGAAGACAA-CTTGTCA-GCCAAAAACAAAGTTAGTGAAGGCTGTG 1330
Query 979 ATGGTAATGGAGAAGATGCAGCCTTGTTGAGCAAGATTGGTAGAGTTGAAAAAGGATACA 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 ATGGTAATGGAGAAGATGCAGCCTTGTTGAGCAAGATTGGTAGAGTTGAAAAAGGATACA 1390
Query 1039 AAGTTAATGAAAATCCTAATCCGCTTGATATACCTGATCCAGAGTTCAGTGCGTTTAAAG 1098
||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1391 AAGCTAATGAAAATTCTAATCCGCTTGATATACCTGATTTAGAGTTCAGTGTGTTTAAAG 1450
Query 1099 TTGAACG-AAATACAGGAGATTTTGCTGTCAATCAAGTGTGGTCTACTACAACTGATTCT 1157
||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1451 TTGAACGGAAA-ACAGAAGATTTTGCTGTCAATCAAGTGTGGTCTACTACAACTGATTGT 1509
Query 1158 AGAGATGGTATGCCTCGGAAATATGCTCGGGTAAAGAAAGTGCTGAATGGCGAGTTCAAG 1217
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1510 AGAGATGGTATGCCTAGGAAATATGCTCGGGTAAAGAAAGTACTGAATGGCGAGTTCAAG 1569
Query 1218 CTGTGGATTACCTACCTTGATCCTGTACTGGATAAGAATGATGAAAGTATTCCAGTTGCT 1277
||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1570 CTGCGGATCACCTACCTTGATCCTGTACTGGATAAGACTGATGAAAGTATTCCAGTTGCT 1629
Query 1278 TGTGGAAAGTTCAAAAATGGGAAAACAGA-GGAAGTTGAGGACCGCTTCA-TCTTTTCAG 1335
||||||||||||||||||||||||||| | ||||||| | ||| ||| || |||||||||
Sbjct 1630 TGTGGAAAGTTCAAAAATGGGAAAACA-ATGGAAGTTAAAGACAGCT-CAATCTTTTCAG 1687
Query 1336 TTCAAATGCATCACTTGTC-TTGCAACAAAACTGTTTCCATATATCCAAGGAAAGGGGAG 1394
|||||||||||||||| | ||||||||| | ||||||||| || ||||||||||||||
Sbjct 1688 GTCAAATGCATCACTTG-CGTTGCAACAATATTGTTTCCATCTACCCAAGGAAAGGGGAA 1746
Query 1395 ATATGGGCTATTTTCAGAGAATGGGATGCGGAATGGAACACTAGTCTAGAAAAGCATAAA 1454
||||||||||| |||||||| ||||| | ||||||||||||||||||| |||||||||||
Sbjct 1747 ATATGGGCTATATTCAGAGAGTGGGAGGAGGAATGGAACACTAGTCTAAAAAAGCATAAA 1806
Query 1455 TTACCATATAAGTATGACTTTGTGGAAATTGTCAGTGATTTTCATGATCTTAAAGGTGTT 1514
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1807 TTTCCATATAAGTATGACTTTGTGGAAATTGTCAGTGATTTTCATGATCTTAACGGGGTT 1866
Query 1515 GGAGTGGCCTATCTGGGAAAACTTAAAGGGTCTGTTCAGCTATTTCACTGGGAGCCGCAG 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 GGAGTGGCCTATCTGGGAAAACTTAAAGGGTCTGTTCAGCTATTTCACTGGGAGCCGCAG 1926
Query 1575 AATGGAATTTGCCAGATTCAATTTACTCCGAAAGATATGCTTAGATTTTCTCACAAAGTA 1634
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1927 CATGGAATTTGCCAGATTCAATGTAGTCCGAAAGATATGCTTAGATTTTCTCACAAAGTA 1986
Query 1635 CCAGCAGTCAAAATGACTGGAAAAGAGAAAGAATGTGTTCCACCTAACTCATATGAACTG 1694
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1987 CCAGCAGTCAAAATGACTGGAAAAGAGAAAGAATCTGTTCCACCTAACTCATATGAATTG 2046
Query 1695 GATCCTGCTGCATTACCTAAAGATATATTTCAGGTTGATGCGGTTGATATGGAGATGGAT 1754
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2047 GATCCTGCTGCCTTACCAAAAGATATATTTCAGGTTGATGCGGTTGATATGGAGATGGAT 2106
Query 1755 AGTGAGATCCTGAAAGGTAAACCTGACGGCCCTGTTCCCGAAGCTTCCAAGGTTGGAGCG 1814
||||||||||||||||||||| ||||||||||| | | | ||||||||||||
Sbjct 2107 AGTGAGATCCTGAAAGGTAAAGCTGACGGCCCT-T-----A---T---AAGGTTGGAGCG 2154
Query 1815 AAGGCCAAGCCAGTTCCAGAGACCGCACCATCTCCAAGGAAACGTC-GAAAATCTGATGA 1873
||||||||| |||||| |||||||||| |||||||||||||||||| |||| ||||||||
Sbjct 2155 AAGGCCAAGGCAGTTCAAGAGACCGCATCATCTCCAAGGAAACGTCAGAAA-TCTGATGA 2213
Query 1874 TGACA-TG--G--GC-GTATGCAGTAATGTTGGGGAAGTCATAGGTGGAA-CGAACAGAA 1926
||| | || | | |||||||||||| |||||||||||||||| |||| | |||||||
Sbjct 2214 TGATAATGATGATGGTGTATGCAGTAATCTTGGGGAAGTCATAGGCGGAAGC-AACAGAA 2272
Query 1927 GCCATATTTATTCTTCTTGTGAAGTTGATGaaaaaaaGAACACACCAAACAAGTCCAGAG 1986
| ||||||| ||||||||||||||||||||| || ||||||| ||| ||| ||||||
Sbjct 2273 GTCATATTTTTTCTTCTTGTGAAGTTGATGATAA---GAACACATCAACCAAATCCAGAA 2329
Query 1987 AGGATGGTGAGGCCACAGATGTTTTCAAACTTGGAAAATCTCCTCGTCTTCAAACAATTC 2046
||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2330 AGGATGGTGAGTCCACAGATGTTTTCAGACTTCGAAAATCTCCTCGTCTTCAAACAATTC 2389
Query 2047 CAAGCCAACAAGAAGATGAGAAGAAAAGAGCTAAACAAGGTAACAAGATGAATACCCCAA 2106
||| ||| |||| ||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2390 CAAACCACCAAGGAGATGAGAAGAAAAGTGCTAAACAAGGCAACAAGATGAATACCCCAA 2449
Query 2107 AGAAAAT 2113
|||||||
Sbjct 2450 AGAAAAT 2456
Score = 185 bits (100), Expect = 2e-45
Identities = 137/154 (89%), Gaps = 5/154 (3%)
Strand=Plus/Plus
Query 1960 aaaaGAACACACCAAACAAGTCCAGAGAGGATGGTGAGGCCACAGATGTTTTCAAACTTG 2019
||||||| ||| | | ||||||||| || ||||||||||||||||||| |||||||||
Sbjct 2495 AAAAGAAAACATC--A-AAGTCCAGAAAGAATGGTGAGGCCACAGATGTATTCAAACTTC 2551
Query 2020 GAAAATCTCCTCGTCTTCAAACAATTCCAAGCCAACAAGAAGATGAGAAGAAAAG-AGCT 2078
||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | ||
Sbjct 2552 GAAAATCTCCTCGTCTTCAAACAATTCCAAGCCAACAAGGAGATGAGATGAAAAGTA-CT 2610
Query 2079 AAACAAGGTAACAAGATGAATACCCCAAAGAAAA 2112
|||||||| || || ||||||||||| |||||||
Sbjct 2611 AAACAAGGCAATAAAATGAATACCCCGAAGAAAA 2644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 186671194903
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5