BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952009

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:245...   327    2e-89
  AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of ...   235    2e-61


> AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:24566783-24570991 
REVERSE LENGTH=2423
Length=2423

 Score =  327 bits (177),  Expect = 2e-89
 Identities = 206/220 (94%), Gaps = 2/220 (1%)
 Strand=Plus/Plus

Query  5    GTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGC-AAAAAGTGTGGAGACG  63
            ||| |||||||| |||||||||||||||||||||||||||||| ||||| | ||||||| 
Sbjct  59   GTCGCATCTCCCAGTTATGGCTATGGCCGGAGAATCTTCCGGCAAAAAAAT-TGGAGACT  117

Query  64   GCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGGCTTATTTACGACGAGGCGA  123
            | ||||||| |||||| ||||| || |||||||||||||| ||||||||||||||| |||
Sbjct  118  GTGACGGTAAAGTCGCGGGGAACAGACAGCGAAAGGTGGGTCTTATTTACGACGAGACGA  177

Query  124  TGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGATCGCATCAGAG  183
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  178  TGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGACCGCATCAGAG  237

Query  184  TTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAG  223
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  238  TTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAG  277


> AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of 
the RPD3/HDA1 superfamily 18 | chr5:24571171-24574372 REVERSE 
LENGTH=2175
Length=2175

 Score =  235 bits (127),  Expect = 2e-61
 Identities = 191/222 (86%), Gaps = 4/222 (2%)
 Strand=Plus/Plus

Query  4    TGTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGCAA-AAAGTGTGGAGAC  62
            |||| |||||||||| |||| | ||| || | |||||||||||||| ||| || ||||| 
Sbjct  83   TGTCACATCTCCCGGATATGACAATGACCAGCGAATCTTCCGGCAAGAAA-TGCGGAGAG  141

Query  63   GGCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGGCTTATTTACGACGAGGCG  122
            || ||||| | ||||||||| |||||||||||||||||||| ||| |||| |||||| | 
Sbjct  142  GGTGACGGCAAAGTCGCCGGTAAAAGCCAGCGAAAGGTGGGTCTTGTTTATGACGAGACC  201

Query  123  ATGTGCAAACACGACACACCTGACGGCGAGGATCACCCT-GAGTGTCCCGATCGCATCAG  181
            ||||||||||||||||||||| ||||  ||| | | | | |||||||||||||| |||||
Sbjct  202  ATGTGCAAACACGACACACCTAACGGTAAGGTTGA-CGTAGAGTGTCCCGATCGTATCAG  260

Query  182  AGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAG  223
            |||||||||||||||||||||||||||||||||  |||||||
Sbjct  261  AGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTCACTCAAAG  302



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13270685736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5