BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952009 Length=288 Score E Sequences producing significant alignments: (Bits) Value AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:245... 327 2e-89 AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of ... 235 2e-61 > AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:24566783-24570991 REVERSE LENGTH=2423 Length=2423 Score = 327 bits (177), Expect = 2e-89 Identities = 206/220 (94%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 5 GTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGC-AAAAAGTGTGGAGACG 63 ||| |||||||| |||||||||||||||||||||||||||||| ||||| | ||||||| Sbjct 59 GTCGCATCTCCCAGTTATGGCTATGGCCGGAGAATCTTCCGGCAAAAAAAT-TGGAGACT 117 Query 64 GCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGGCTTATTTACGACGAGGCGA 123 | ||||||| |||||| ||||| || |||||||||||||| ||||||||||||||| ||| Sbjct 118 GTGACGGTAAAGTCGCGGGGAACAGACAGCGAAAGGTGGGTCTTATTTACGACGAGACGA 177 Query 124 TGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGATCGCATCAGAG 183 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 178 TGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGACCGCATCAGAG 237 Query 184 TTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAG 223 |||||||||||||||||||||||||||||||||||||||| Sbjct 238 TTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAG 277 > AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of the RPD3/HDA1 superfamily 18 | chr5:24571171-24574372 REVERSE LENGTH=2175 Length=2175 Score = 235 bits (127), Expect = 2e-61 Identities = 191/222 (86%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 4 TGTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGCAA-AAAGTGTGGAGAC 62 |||| |||||||||| |||| | ||| || | |||||||||||||| ||| || ||||| Sbjct 83 TGTCACATCTCCCGGATATGACAATGACCAGCGAATCTTCCGGCAAGAAA-TGCGGAGAG 141 Query 63 GGCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGGCTTATTTACGACGAGGCG 122 || ||||| | ||||||||| |||||||||||||||||||| ||| |||| |||||| | Sbjct 142 GGTGACGGCAAAGTCGCCGGTAAAAGCCAGCGAAAGGTGGGTCTTGTTTATGACGAGACC 201 Query 123 ATGTGCAAACACGACACACCTGACGGCGAGGATCACCCT-GAGTGTCCCGATCGCATCAG 181 ||||||||||||||||||||| |||| ||| | | | | |||||||||||||| ||||| Sbjct 202 ATGTGCAAACACGACACACCTAACGGTAAGGTTGA-CGTAGAGTGTCCCGATCGTATCAG 260 Query 182 AGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAG 223 ||||||||||||||||||||||||||||||||| ||||||| Sbjct 261 AGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTCACTCAAAG 302 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13270685736 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5