BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952015

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01350.1 | Symbols:  | Zinc finger (CCCH-type/C3HC4-type RIN...   244    2e-64


> AT1G01350.1 | Symbols:  | Zinc finger (CCCH-type/C3HC4-type RING 
finger) family protein | chr1:136124-138162 FORWARD LENGTH=1400
Length=1400

 Score =  244 bits (132),  Expect = 2e-64
 Identities = 160/174 (92%), Gaps = 0/174 (0%)
 Strand=Plus/Plus

Query  66   CCAGATATATGCAAGGATTACAAAGAAACAGGATACTGTAGATATCGAGATTCTTGTAAG  125
            ||||| || |||||||||||||||||||| ||||||||| ||||| ||||||| ||||||
Sbjct  783  CCAGACATTTGCAAGGATTACAAAGAAACCGGATACTGTGGATATGGAGATTCGTGTAAG  842

Query  126  TTCTTGCATGACCATAGGGATTACAAACCGGGATGGCAGATAGAGAAAGATTGTGAAGAA  185
            ||||||||||||| | ||||||||||||| |||||||||||||||||||| || ||||||
Sbjct  843  TTCTTGCATGACCGTGGGGATTACAAACCAGGATGGCAGATAGAGAAAGAGTGGGAAGAA  902

Query  186  GTAGAGAAAGTTTGGAAGAGAAACAAAGCTATGGGAGTTGAGGATGAAGATGAT  239
            | |||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct  903  GCAGAGAAAGTTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGAAGATGAT  956



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12868543744


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5