BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952027

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05440.1 | Symbols:  | C2 domain-containing protein | chr3:1...   462    9e-130


> AT3G05440.1 | Symbols:  | C2 domain-containing protein | chr3:1572718-1573266 
FORWARD LENGTH=369
Length=369

 Score =  462 bits (250),  Expect = 9e-130
 Identities = 281/296 (95%), Gaps = 2/296 (1%)
 Strand=Plus/Plus

Query  21   ATGGAGTATTATCAACCGGTGGAGATTAACGTTCTCTCAGCTCAAGATCTCGACTCCGTC  80
            ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct  1    ATGGAGTATTATCAACCGGTGGAGATTAACGTTCTATCAGCTCAAGATCTCAACTCCATC  60

Query  81   AATCTTTTGTTCAGACCAACAGTCTATGTTTCCGTCTCGGTCACACGTGGTTCACGTGAC  140
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  61   AATCTTTTGTTCAGACCAACTGTCTATGTTTCCGTCTCGGTCACACGTGGTTCACGTGAC  120

Query  141  AAGCAAGTCACTCCAGCTGCTGCATGCGG-TAAGAAACTCTTACGGTGGAATTACCGTAT  199
            |||||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||
Sbjct  121  AAGCAAGTCACTCCAGCTGCTGCATG-GGATAAGAAATTCTTACGGTGGAATTATCGTAT  179

Query  200  GAAATTCTATATAGAAGATGACAAATTTCGAAGGAATGACTCAGTGTTTGTGTTTCAAAT  259
            ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct  180  GAAATTCTATATAGAAGATGACAAGGTTCGAAGGAATGAGTCAGTGTTTGTGTTTCAAAT  239

Query  260  CAAGTGTAAGAGATTTTTCGGGTCTGACCAAGTCGTTGGGAAAGTTTTTGTACCGG  315
            |||||||||||||||||||||||| |||||||||||||||||| ||||  ||||||
Sbjct  240  CAAGTGTAAGAGATTTTTCGGGTCCGACCAAGTCGTTGGGAAACTTTTCATACCGG  295



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18749870377


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5