BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952029
Length=295
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18270.1 | Symbols: ATTRANS11, TRANS11 | translocase 11 | ch... 183 6e-46
> AT4G18270.1 | Symbols: ATTRANS11, TRANS11 | translocase 11 |
chr4:10099208-10101897 REVERSE LENGTH=1599
Length=1599
Score = 183 bits (99), Expect = 6e-46
Identities = 121/131 (92%), Gaps = 3/131 (2%)
Strand=Plus/Plus
Query 1 CATCGTGTTACTTTGTTTCCATGGGAAACTTAGTCAAAGCAACCGATGGTTTCGATGGAT 60
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 926 CATCGTTTTACTTTGTTTCCATGGGAAACTTAGTCAAAGCAACCGATGGTCTCGATGGAT 985
Query 61 TGGCGGGAGGTATTGCTGCATTG-GCTTTCGTTGCAATGGTAGTTGCAGTTCTTCCTATT 119
||||||||||||||||||| ||| | ||| |||||||||| | | |||||||||||||||
Sbjct 986 TGGCGGGAGGTATTGCTGCTTTGTGTTTT-GTTGCAATGGCAATAGCAGTTCTTCCTATT 1044
Query 120 TGCTCTGCATC 130
||||||| |||
Sbjct 1045 TGCTCTG-ATC 1054
Score = 165 bits (89), Expect = 2e-40
Identities = 103/110 (94%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 126 GCATCAGTTTCCATGGGAGATACTGGATCCTTGGCTCTAGGTGGAGCTTTGGCTGTAATA 185
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1120 GCATCAGTTTCCATGGGAGATACAGGATCCTTGGCTCTAGGTGGAGCTTTGGCTGCAATG 1179
Query 186 GCTGCTTGCTTAGGAATGTTCTTCCCATTGCTCATATCGACTGGTGTCGC 235
|||||||||| ||||||||||||||| ||| |||||||| ||||||||||
Sbjct 1180 GCTGCTTGCTCAGGAATGTTCTTCCCGTTGTTCATATCGTCTGGTGTCGC 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13622559979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5