BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952030

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) ...   355    2e-97


> AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) 
DNA-binding superfamily protein | chr1:18927877-18929680 FORWARD 
LENGTH=1187
Length=1187

 Score =  355 bits (192),  Expect = 2e-97
 Identities = 230/249 (92%), Gaps = 0/249 (0%)
 Strand=Plus/Plus

Query  29   GATCAAATCGGAATCTTGTGCTGGTTCTAGCTCGAAAGCATGTAGGGAGAAACAAAGACG  88
            ||||||| | ||||||||  ||||||||| ||||||||| ||||||||||||||||||||
Sbjct  516  GATCAAAACTGAATCTTGCACTGGTTCTAACTCGAAAGCTTGTAGGGAGAAACAAAGACG  575

Query  89   TGATAGGCTAAATGACAAGTTTACGGAATTGAGTTCCATCTTGGAACCTGGGAGAGCTCC  148
            |||||| |||||||||||||||||||| ||||||||| | ||||||||||||||| ||||
Sbjct  576  TGATAGACTAAATGACAAGTTTACGGAGTTGAGTTCCGTATTGGAACCTGGGAGAACTCC  635

Query  149  AAAAACAGACAAGGTTGCTATTATCAGTGATGCAATTCGCATGGTGAATCAAGTTAGAGA  208
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||
Sbjct  636  AAAAACAGACAAGGTTGCTATTATCAATGATGCAATTCGCATGGTGAATCAAGCAAGAGA  695

Query  209  CGAAGCACAGAAATTGAAGGACTTGAATTCAAGCCTCCAGGAGAAAATCAAGGAGTTGAA  268
             ||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  696  TGAAGCGCAGAAACTAAAGGACTTGAACTCAAGCCTCCAGGAGAAAATCAAGGAGTTGAA  755

Query  269  GGATGAGAA  277
            |||||||||
Sbjct  756  GGATGAGAA  764



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18800138126


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5