BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952031

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43600.1 | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydr...   344    4e-94
  AT1G35530.2 | Symbols:  | DEAD/DEAH box RNA helicase family pro...   163    1e-39
  AT1G36020.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   135    3e-31


> AT5G43600.1 | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydrolase 
| chr5:17512476-17515495 FORWARD LENGTH=1821
Length=1821

 Score =  344 bits (186),  Expect = 4e-94
 Identities = 212/225 (94%), Gaps = 0/225 (0%)
 Strand=Plus/Plus

Query  195  GAGATCTCTGGAGATAATCTTGTTTACATATGAAGAACCAACCCGATTTGGGATCAGTTG  254
            ||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct  691  GAGGTCTCTGGAGATAATCTTGTTCACATCTGAAGAACCGACCCGATTTGGGATCAGTTG  750

Query  255  TTTAGGAAGCTGCTTGCTTGCTGGAAGCAAAGAACTTACAGAAGTACTAAAGACTACAAT  314
            |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct  751  TTTAGGAAGCCGCTTGCTTGCTGGAAGCAAAGAACTTGCAGAAGCACTAAAGACTACAGT  810

Query  315  TTTTGATGGCCAAAATGTGTCCTTTATAGAAGCAGCTAGATCAACTGGATACGCAGAAGA  374
            | ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct  811  TGTTGATGGCCAAAATGTGTCTTTTATAGAAGCAGCTAGATCAGCAGGATACGCAGAAGA  870

Query  375  TAAAGATGACGACTTATCGAGTGTGTTCTTGAAGAAAGGAAGTTA  419
             ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  871  CAAAGATGACGACTTATCGAGTGTGTTCTTGAAGAAAGGAAGTTA  915


> AT1G35530.2 | Symbols:  | DEAD/DEAH box RNA helicase family protein 
 | chr1:13089869-13097078 FORWARD LENGTH=4298
Length=4298

 Score =  163 bits (88),  Expect = 1e-39
 Identities = 125/142 (88%), Gaps = 6/142 (4%)
 Strand=Plus/Plus

Query  60   agagatggaATCTAGGGTTCTAATAGAAACCATCGAAGAAGACGAAGAGTTCGCTTGGGA  119
            ||| |||| ||||||||||| |||||||||||||||||||||||  || |||| ||||||
Sbjct  122  AGAAATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGA  181

Query  120  AGCAGCAGTCAAAGAAATCGACTTGCCTTGTCTTAAAACCTCCAATGCTTCTTCTTCTTC  179
            ||||||||||||||||||||||||| |||||||||||||| | || ||||||||||||||
Sbjct  182  AGCAGCAGTCAAAGAAATCGACTTGGCTTGTCTTAAAACCACAAACGCTTCTTCTTCTTC  241

Query  180  --C--C--ATTTCACTCCTTTG  195
              |  |  ||||||||||||||
Sbjct  242  GTCATCCCATTTCACTCCTTTG  263


> AT1G36020.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: DEAD/DEAH box RNA helicase family protein  (TAIR:AT1G35530.1); 
Has 18 Blast hits to 18 proteins in 5 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr1:13433919-13434340 REVERSE LENGTH=351
Length=351

 Score =  135 bits (73),  Expect = 3e-31
 Identities = 89/97 (92%), Gaps = 0/97 (0%)
 Strand=Plus/Plus

Query  63   gatggaATCTAGGGTTCTAATAGAAACCATCGAAGAAGACGAAGAGTTCGCTTGGGAAGC  122
            ||||| ||||||||||| |||||||||||||||||||||||  || |||| |||||||||
Sbjct  30   GATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGAAGC  89

Query  123  AGCAGTCAAAGAAATCGACTTGCCTTGTCTTAAAACC  159
            |||||||||||||||||||||| ||||||| ||||||
Sbjct  90   AGCAGTCAAAGAAATCGACTTGGCTTGTCTAAAAACC  126



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21967006313


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5