BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952031 Length=461 Score E Sequences producing significant alignments: (Bits) Value AT5G43600.1 | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydr... 344 4e-94 AT1G35530.2 | Symbols: | DEAD/DEAH box RNA helicase family pro... 163 1e-39 AT1G36020.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 135 3e-31 > AT5G43600.1 | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydrolase | chr5:17512476-17515495 FORWARD LENGTH=1821 Length=1821 Score = 344 bits (186), Expect = 4e-94 Identities = 212/225 (94%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 195 GAGATCTCTGGAGATAATCTTGTTTACATATGAAGAACCAACCCGATTTGGGATCAGTTG 254 ||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| Sbjct 691 GAGGTCTCTGGAGATAATCTTGTTCACATCTGAAGAACCGACCCGATTTGGGATCAGTTG 750 Query 255 TTTAGGAAGCTGCTTGCTTGCTGGAAGCAAAGAACTTACAGAAGTACTAAAGACTACAAT 314 |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| | Sbjct 751 TTTAGGAAGCCGCTTGCTTGCTGGAAGCAAAGAACTTGCAGAAGCACTAAAGACTACAGT 810 Query 315 TTTTGATGGCCAAAATGTGTCCTTTATAGAAGCAGCTAGATCAACTGGATACGCAGAAGA 374 | ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| Sbjct 811 TGTTGATGGCCAAAATGTGTCTTTTATAGAAGCAGCTAGATCAGCAGGATACGCAGAAGA 870 Query 375 TAAAGATGACGACTTATCGAGTGTGTTCTTGAAGAAAGGAAGTTA 419 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 871 CAAAGATGACGACTTATCGAGTGTGTTCTTGAAGAAAGGAAGTTA 915 > AT1G35530.2 | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:13089869-13097078 FORWARD LENGTH=4298 Length=4298 Score = 163 bits (88), Expect = 1e-39 Identities = 125/142 (88%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 60 agagatggaATCTAGGGTTCTAATAGAAACCATCGAAGAAGACGAAGAGTTCGCTTGGGA 119 ||| |||| ||||||||||| ||||||||||||||||||||||| || |||| |||||| Sbjct 122 AGAAATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGA 181 Query 120 AGCAGCAGTCAAAGAAATCGACTTGCCTTGTCTTAAAACCTCCAATGCTTCTTCTTCTTC 179 ||||||||||||||||||||||||| |||||||||||||| | || |||||||||||||| Sbjct 182 AGCAGCAGTCAAAGAAATCGACTTGGCTTGTCTTAAAACCACAAACGCTTCTTCTTCTTC 241 Query 180 --C--C--ATTTCACTCCTTTG 195 | | |||||||||||||| Sbjct 242 GTCATCCCATTTCACTCCTTTG 263 > AT1G36020.1 | Symbols: | BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT1G35530.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:13433919-13434340 REVERSE LENGTH=351 Length=351 Score = 135 bits (73), Expect = 3e-31 Identities = 89/97 (92%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 63 gatggaATCTAGGGTTCTAATAGAAACCATCGAAGAAGACGAAGAGTTCGCTTGGGAAGC 122 ||||| ||||||||||| ||||||||||||||||||||||| || |||| ||||||||| Sbjct 30 GATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGAAGC 89 Query 123 AGCAGTCAAAGAAATCGACTTGCCTTGTCTTAAAACC 159 |||||||||||||||||||||| ||||||| |||||| Sbjct 90 AGCAGTCAAAGAAATCGACTTGGCTTGTCTAAAAACC 126 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21967006313 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5