BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952033
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34180.1 | Symbols: | Cyclase family protein | chr4:1636935... 1273 0.0
AT1G44542.1 | Symbols: | Cyclase family protein | chr1:1686497... 760 0.0
> AT4G34180.1 | Symbols: | Cyclase family protein | chr4:16369357-16371430
REVERSE LENGTH=1419
Length=1419
Score = 1273 bits (689), Expect = 0.0
Identities = 777/818 (95%), Gaps = 12/818 (1%)
Strand=Plus/Plus
Query 1 TTAACCCGCGACCCGAAACAATGACCCGGTCCGTGAATTTCCCTCTCTTCATCCTCGCCG 60
|||||| ||||||||||||||||||||||||||| | ||||||||||||| || ||||||
Sbjct 28 TTAACCGGCGACCCGAAACAATGACCCGGTCCGTCAGTTTCCCTCTCTTCCTCTTCGCCG 87
Query 61 TTGCACTCTCCCTTTCTTCTTCTCTCCTCGCCGTCAAACACTCCGATGATCCCAAACCAA 120
||| ||||||||| ||||||||||||||||||| | | |||||||||||||
Sbjct 88 TTGTACTCTCCCTCTCTTCTTCTCTCCTCGCCG------A---C---GATCCCAAACCAA 135
Query 121 TCCGCCGTGAGGTTTATGAAGGAGGTAAGATATACGACATCAGCCACCGTTACACGCCGG 180
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 136 TCCGCCGTGAGGTCTACGAAGGAGGTAAGATATACGACATCAGCCATCGTTACACGCCGG 195
Query 181 AGATTCCAGCTTGGGAATCTTCGGAGGGATTGGGAAAGACGTTCTTGCGATTAGCCGCGA 240
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 196 AGATTCCAGCTTGGGAATCTTCGGAAGGATTGGGAAAGACGTTCCTGCGATTAGCCGCGA 255
Query 241 GTATGAAGAATGGATCATTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GTATGAAGAATGGATCATTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAA 315
Query 301 CTCACGTCGATGCTCCAGGTCACTTCTGGGACAATTATTACGACGCTGGTTTTGATACTG 360
||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 316 CTCACGTGGATGCTCCAGGTCACTTTTGGGATAATTATTACGATGCTGGTTTTGATACTG 375
Query 361 ATTCGCTTGATCTTCAAGTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCAAGAGATA 420
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 376 ATTCGCTTGATCTCCAAGTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCGAGAGATA 435
Query 421 AGAACATTACTGCTGAGGTAATGGAATCGCTTCATATTCAAAGAGGAGTTCGTCGTGTGC 480
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 436 AGAACATTACTGCTGAGGTAATGGAATCACTTCATATACAAAGAGGAGTTCGTCGTGTGC 495
Query 481 TCTTTAGAACATCCAACACTGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCT 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TCTTTAGAACATCCAACACCGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCT 555
Query 541 TTGCTGGGTTCATGACCGATGGGGCGAAATGGTTGGTTGAGAACACAGACATCAAACTTA 600
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 556 TTGCTGGGTTCATGACCGATGGGGCTAAATGGTTGGTTGAGAATACAGACATCAAACTTA 615
Query 601 TTGGGCTTGATTATCTTTCCTTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTTA 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TTGGGCTTGATTATCTTTCATTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTTA 675
Query 661 TACTTAAAGGACGGGATATAATCCCTGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTAG 720
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 676 TACTTAAAGGACGGGATATAATCCCAGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTAG 735
Query 721 GAACATACTCGCTTCATTGCTTACCGTTGAGATTGGTTGGAGCGGAAGGAGCACCGACAA 780
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 736 GAACATACTCGCTTCATTGCTTACCGCTGAGATTAGTTGGAGCGGAAGGAGCACCGACAA 795
Query 781 GATGCATTCTCATCAAGTGATTCAGTTCATCTTTTTCT 818
|||||||||||||||||||||||||||| |||| ||||
Sbjct 796 GATGCATTCTCATCAAGTGATTCAGTTCTTCTTCTTCT 833
> AT1G44542.1 | Symbols: | Cyclase family protein | chr1:16864970-16866605
REVERSE LENGTH=1023
Length=1023
Score = 760 bits (411), Expect = 0.0
Identities = 619/717 (86%), Gaps = 24/717 (3%)
Strand=Plus/Plus
Query 114 AAACCAATCCGCCGTGAGGTTTATGAAGGAG---GTAAGATATACGACATCAGCCACC-G 169
|||||||||| || ||| |||||||| |||| | |||||||||||||||||||||| |
Sbjct 162 AAACCAATCCACCATGAAGTTTATGACGGAGAAAGGAAGATATACGACATCAGCCACCAG 221
Query 170 TTACACGCCGGAGATT-CCAGCTTGGGAATCTTCGGAGGGA-TTGGGAAAGACGTTCTTG 227
|||||||||||| || || | |||||| ||||| || ||| | ||| | || |||||
Sbjct 222 -TACACGCCGGAG-TTGCCGGTTTGGGAGTCTTCAGAAGGACTAGGG--A-ACTTTCTT- 275
Query 228 CGA-TTAGCCGCGAGTATGAAGAATGGAT-C-ATTCGCTAACGTATCGGAGATGAAACTA 284
|| || |||| ||||||||||||||||| | | | ||||| | ||| ||||| |||||
Sbjct 276 AGACTT-GCCGTGAGTATGAAGAATGGATCCGA-T-GCTAATATCTCGAAGATGGAACTA 332
Query 285 TCTGTTCACTCTGGAACTCACGTCGATGCTCCAGGTCACTTCTGGGACAATTATTACGAC 344
|||||||||||||||||||| || ||||| ||||| || ||| ||| ||||||| ||
Sbjct 333 TCTGTTCACTCTGGAACTCATGTTGATGCACCAGGCCATTTCCATGACCATTATTATGA- 391
Query 345 G-CTGGTTTTGATACTGATTCGCTTGATCTTCAAGTCCTAAATGGTCCTGCTTTGTTGGT 403
| ||||||||||||||||||| |||||||||||| |||| |||||||||||||| |||||
Sbjct 392 GTCTGGTTTTGATACTGATTCACTTGATCTTCAAATCCTTAATGGTCCTGCTTTATTGGT 451
Query 404 TGATGTTCCAAGAGATAAGAACATTACTGCTGAGGTAATGGAATCGCTTCATATTCAAAG 463
||||||||||||||||||||||||| | |||||||| ||| |||| || ||||||| |||
Sbjct 452 TGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTACATATTCCAAG 511
Query 464 A-GGAGTTCGTCGTGTGCTCTTTAGAACATCCAACACTGACAAGCGGCTTATGTTTAAGA 522
| ||| | |||||||| ||||||| ||||| |||||||| | | |||||||||||||||
Sbjct 512 AGGGA-TCCGTCGTGTTCTCTTTAAAACATTGAACACTGATAGGAGGCTTATGTTTAAGA 570
Query 523 AAGAGTTTGATTCAAGCTTTGCT-GGGTTCATGACCGATGGGGCGAAATGGTTGGTTGAG 581
|||| |||||||||||||||| | ||||| ||| ||||||||||||||||||||||||
Sbjct 571 AAGAATTTGATTCAAGCTTTG-TCGGGTTTATGGTCGATGGGGCGAAATGGTTGGTTGAA 629
Query 582 AACACAGACATCAAACTTATTGGGCTTGATTATCTTTCCTTTGCTGCTTTTGAGGAATCA 641
|| ||||||||||||||| ||||||||||||||||||| |||||||||| ||| ||| ||
Sbjct 630 AATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATGAAGCA 689
Query 642 CCTGCAACACACAGGGTTATACTTAAAGGACGGGATATAATCCCTGTGGAAGCGCTGAAG 701
||||| || || ||| |||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 690 CCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAAGCGCTGAAG 749
Query 702 CTGGATGGTGTGGAGGTAGGAACATACTCGCTTCATTGCTTACCGTTGAGATTGGTTGGA 761
||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 750 CTGGATGACGTGGAGGTAGGAATGTACACGCTTCATTGCTTACCGTTAAGATTGGTTGGA 809
Query 762 GCGGAAGGAGCACCGACAAGATGCATTCTCATCAAGTGATTCAGTTCATCTTTTTCT 818
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 810 GCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGATTCAGTTCATCTTTTTCT 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39986381012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5