BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952037
Length=310
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18... 274 4e-73
> AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18036116-18040928
FORWARD LENGTH=3159
Length=3159
Score = 274 bits (148), Expect = 4e-73
Identities = 218/250 (87%), Gaps = 12/250 (5%)
Strand=Plus/Plus
Query 32 GTCCGAGAAGACAAGCAAAGGTCTCAAATTTGACATGTTTAGTGAAGATATTCCTTCCAT 91
||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct 1326 GTCAGAGAAGACAAGCAAAGGTCTCAAATTTGAGATGTTTAGTGAAAATATTCCTTCCTT 1385
Query 92 ACTCGACGGTGATTCCTTGATTCTGGGGGAGCTTTATTACTTAACTAAGGACAAAACAGA 151
||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1386 ACTTGACGGTGATTCTTTGATTCCGGGGGAGCTTTATTACTTAACTAAAGACAAAACAGA 1445
Query 152 TTATGCTTGGTATACCACAAGCATAAAGATTGAAGATGATGACATACCAGACCAGAAAGG 211
||||||||| | | |||||||||| || |||||| | |||||||| |||||
Sbjct 1446 TTATGCTTG-----C-----G--TAAAGATTGACGAAGATGACTTTCCAGACCAAAAAGG 1493
Query 212 TCAGAAGACGATACTGAGAGTAGCGGGTCTTGGTCACGCATTAATCGTTTACGTTAATGG 271
|| |||||| ||||||||||||||| |||||||||||||| | |||||||||||||| ||
Sbjct 1494 TCTGAAGACTATACTGAGAGTAGCGAGTCTTGGTCACGCACTGATCGTTTACGTTAACGG 1553
Query 272 AGAATACGCA 281
||| ||||||
Sbjct 1554 AGAGTACGCA 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14376576214
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5