BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952040
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49340.2 | Symbols: ATPI4K ALPHA | Phosphatidylinositol 3- a... 1989 0.0
AT1G51040.1 | Symbols: | Protein kinase superfamily protein | ... 821 0.0
> AT1G49340.2 | Symbols: ATPI4K ALPHA | Phosphatidylinositol 3-
and 4-kinase family protein | chr1:18252355-18264462 FORWARD
LENGTH=6582
Length=6582
Score = 1989 bits (1077), Expect = 0.0
Identities = 1581/1826 (87%), Gaps = 27/1826 (1%)
Strand=Plus/Plus
Query 1 ATCATCCTGTCTGGGGTAAAATGGACAGCTATGCAGTGGGAAAGGAGAAGAGGAAGCAAC 60
||||||| ||||||||| | ||||||| ||| | ||||||| || || ||||||||
Sbjct 4277 ATCATCCCGTCTGGGGTGAGATGGACAACTACACTCTGGGAAAAGAAAAAAGGAAGCAGT 4336
Query 61 TGCTTCTGATTCTTTGCCAACATGAATCTGATAGGCTTGATGTTTGGGCACAACCTATTA 120
||||| | || || ||||| |||||| |||| |||||||| |||||||||||||||||||
Sbjct 4337 TGCTTTTAATGCTCTGCCAGCATGAAGCTGACAGGCTTGACGTTTGGGCACAACCTATTA 4396
Query 121 GTTCAAAGAACAGTCCTCCATATTCACGGCTAAAAATAAGCTCTGGGAAATGGACTGAAC 180
|||||||| |||| ||| ||||| ||||| ||||||||||||| ||||||||| |||
Sbjct 4397 GTTCAAAGGACAG---TCCGTATTCGCGGCTGAAAATAAGCTCTGAGAAATGGACCGAAT 4453
Query 181 ATGCTAAAACTGCCTTTTCAGTGGATCCAAGGATTGCTCTATCA-TTAGCTTCAAGATTT 239
|||||||||| ||||||||||||||||| | |||||| ||||| || || |||||||||
Sbjct 4454 ATGCTAAAACGGCCTTTTCAGTGGATCCTCGCATTGCTTTATCAGTT-GCCTCAAGATTT 4512
Query 240 CCAGCAAAT-ATTGCTGTGAAATCCCAAGTCACTCAGCTAGTTCAGGCTCATATAGTAGA 298
|| |||||| || |||||||||| ||||||||||||| |||||| | ||||||||||
Sbjct 4513 CCGGCAAATGCTT-CTGTGAAATCTGAAGTCACTCAGCTGGTTCAGACAAATATAGTAGA 4571
Query 299 TCTTCGTACAATTCCTGAGGCGTTGCCATATTTTGTCACACCTAAAAGCGTTGAAGAGAA 358
||||||||||||||||||||| ||||| |||||||| ||||| |||| |||||||||||
Sbjct 4572 TCTTCGTACAATTCCTGAGGCATTGCCGTATTTTGTTACACCGAAAAATGTTGAAGAGAA 4631
Query 359 CTCAGTGCTGTTGCGA-CAGCTGCCTCATTGGGCTGCTTGTTCAATTACACAGGCTCTTG 417
|||||||||||||| | ||||| || || |||||||||||||||||||||||||||||||
Sbjct 4632 CTCAGTGCTGTTGC-AGCAGCTACCGCACTGGGCTGCTTGTTCAATTACACAGGCTCTTG 4690
Query 418 AGTTCCTCACTCCTACTTATAAGGGACATCCTCGTGTCATGGCATATGTCCTGCGAGTTT 477
|||||||||| ||| |||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 4691 AGTTCCTCACGCCTGCTTATAAGGGACATCCACGTGTCATGGCATATGTCCTACGAGTTT 4750
Query 478 TAGAGTCCTACCCCCCTGAGCGAGTCACTTTCTTCATGCCACAGTTAGTGCAGTCTCTGC 537
||||||||||||| ||||| ||||| ||||| |||||||| ||||| ||||||||| |||
Sbjct 4751 TAGAGTCCTACCCTCCTGAACGAGTTACTTTTTTCATGCCGCAGTTGGTGCAGTCTTTGC 4810
Query 538 GCTATGATGAAGGGAGGCTGGTTGAAGGGTATCTTCTTAGAGCTACCCAAAGAAGTGACA 597
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 4811 GCTATGATGATGGGAGGCTAGTTGAAGGGTATCTTCTTAGAGCTACCCAAAGAAGTGACA 4870
Query 598 TATTTGCTCATATCCTCACGTGGCATTTGCAGGGTGAGTCTGTTCAGGAAACTGTGAAAG 657
||||||| || || |||| ||||||||||| |||||| ||| ||||||||| ||| |
Sbjct 4871 TATTTGCCCACATTCTCATTTGGCATTTGCAAGGTGAGGATGTGCAGGAAACTCCGAAGG 4930
Query 658 ATGGTGCTTTCGATAAGAATACATCATTCCAAGCAATCTTGTCAGAGGTTCGACAGCATA 717
||||| || ||||||||||| | ||||||||| ||| ||| || ||||||| |||||||
Sbjct 4931 ATGGTTCTATCGATAAGAATGCGGCATTCCAAGAAATTTTGCCACAGGTTCGGCAGCATA 4990
Query 718 TCATTGATGGTTTTAGTCCAAAGGCCTTGGACATGTTCAAAAGAGAGTTTGACTTCTTTG 777
||||||||||||| || || || |||||||||||||||| |||||||||||||||||||
Sbjct 4991 TCATTGATGGTTTCAGCCCCAACGCCTTGGACATGTTCACTAGAGAGTTTGACTTCTTTG 5050
Query 778 AAAAGGTTACATCTATTTCTGGGGCATTGTTTCCTCTTCCAAAGGAAGAACGAAGAGCTG 837
| |||||||| ||||| ||||||| || || |||||||||||||||||||| ||||| |
Sbjct 5051 ACAAGGTTACTTCTATATCTGGGGTGTTATTCCCTCTTCCAAAGGAAGAACGCAGAGCCG 5110
Query 838 GTATCAGGAGGGAGTTGGAGAAAATCAAAATGCAAGGAGAAGACCTTTATTTGCCTACGG 897
|||| |||||||||||||||||||| ||||||| ||||| |||||||||||||| || |
Sbjct 5111 GTATTAGGAGGGAGTTGGAGAAAATTGAAATGCAGGGAGATGACCTTTATTTGCCAACTG 5170
Query 898 CTCCTAACAAGCTTGTTAAGGGTATCCA-GATAGACAGTGGCATAACCCTT-CAATCAGC 955
|||||||||||||||||| |||||||| | |||||||||| ||| ||||| ||||||||
Sbjct 5171 CTCCTAACAAGCTTGTTAGGGGTATCCGTG-TAGACAGTGGAATA-CCCTTACAATCAGC 5228
Query 956 TGCCAAAGTCCCTATCATGATAACCTTTAACGTTGTTGATCGTGATGGTAACCAGAATGA 1015
|||||||||||||||||||||||| ||||||||| |||||||||||||| |||| | |||
Sbjct 5229 TGCCAAAGTCCCTATCATGATAACTTTTAACGTTATTGATCGTGATGGTGACCACAGTGA 5288
Query 1016 TGCGAAACCACAGGCTTGTATTTTCAAGGTTGGAGATGATTGCCGTCAAGATGTTCTTGC 1075
|| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 5289 TGTAAAACCACAGGCTTGCATTTTCAAGGTTGGAGATGATTGCCGGCAAGATGTTCTTGC 5348
Query 1076 CCTTCAAGTGATATCGCTTCTTAGAGACATATTTCAAGCGGTTGGTCTTAATCTTTATCT 1135
||||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 5349 CCTTCAAGTGATATCTCTTCTTAGAGACATATTTCAAGCAGCTGGTCTTAACCTTTATCT 5408
Query 1136 TTTTCCTTATGGAGTACTTCCAACTGGGGCAGGGAGGGGG-ATAATCGAGGTAGTGCCAA 1194
|||||| ||||||||||| |||||||| || || | |||| ||||| ||||| ||||| |
Sbjct 5409 TTTTCCATATGGAGTACTCCCAACTGGTGC-GGAAAGGGGCATAATTGAGGTGGTGCCTA 5467
Query 1195 ATACACGAAGCAGAAGTCAAATGGGTGA-ATCAACCGATGGTGGCTTGTATGAGATCTTT 1253
||||| |||||||||||||||||||||| | | || || || || ||||||||||| |||
Sbjct 5468 ATACAAGAAGCAGAAGTCAAATGGGTGAGA-CTACTGACGGGGGTTTGTATGAGATTTTT 5526
Query 1254 CAAGAGGAGTTTGGACCCGTTGGCTCACCCTCCTTTGAAACGGCAAGGG-GTAACTTCCT 1312
||| | || | ||||||||| |||||| || |||||||||| ||| ||| | ||||||||
Sbjct 5527 CAACAAGACTATGGACCCGTCGGCTCAACCACCTTTGAAACAGCACGGGAG-AACTTCCT 5585
Query 1313 CACCAGCAGTGCTGGTTACGCGGTGGCGAGTCTTTTACTCCAGTCCAAAGACAGACACAA 1372
|| ||| ||||| ||||| || ||||| ||||||||||||||| ||||||||||||||||
Sbjct 5586 CATCAGTAGTGCCGGTTATGCAGTGGCTAGTCTTTTACTCCAGCCCAAAGACAGACACAA 5645
Query 1373 CGGCAATCTCCTCTACGACAACATGGGAAGGCTTGTTCACATTGATTTTGGTTTCATTTT 1432
|| |||||||||| ||| || ||||||| ||||| ||||| || ||||||||||||||
Sbjct 5646 TGGAAATCTCCTCTTCGATGACGTGGGAAGACTTGTCCACATCGACTTTGGTTTCATTTT 5705
Query 1433 TGAAACCTCCCCTGGTGGAAACATGCGTTTTGAGAGCGCACATTTCAAACTGAGCCACGA 1492
||||| || |||||||| |||||||| || ||||| || ||||||||||||||||||||
Sbjct 5706 GGAAACTTCGCCTGGTGGGAACATGCGATTCGAGAGTGCTCATTTCAAACTGAGCCACGA 5765
Query 1493 AATGACACAGTTGCTTGATCCATCAGGGAAT-ATGAAGAGCGAATCTTGGCATCAGTTTG 1551
|||||| |||||||| ||||| || ||| | ||||| ||| || | |||||||||||||
Sbjct 5766 AATGACTCAGTTGCTAGATCCCTC-GGGTGTTATGAAAAGCAAAACATGGCATCAGTTTG 5824
Query 1552 TGAGCTTGTGCGTGAAGGGTTACTTGGCTGCTCGCCGGTACATGGAGGGGATCATCAGTA 1611
||||||||||||| ||||| ||||| |||||||| ||| | ||||| || |||||||| |
Sbjct 5825 TGAGCTTGTGCGTCAAGGGGTACTTAGCTGCTCGGCGGCAGATGGATGGAATCATCAGCA 5884
Query 1612 CAGTGGAAATGATGGTGGAAAGTGGATTGCCTTGCTTCAGCAGAGGAGATCCAATTGAGA 1671
| ||| |||||||| | |||||||| ||||||||||| ||||||||||||||||||| |
Sbjct 5885 CGGTGCAAATGATGCTAGAAAGTGGGTTGCCTTGCTTTAGCAGAGGAGATCCAATTG-GT 5943
Query 1672 AA-CTTCGCAAGAGATTTCATCCC-GAGATGAGTGAGCGTGAAGCCGCACACTTCATGAT 1729
|| ||| | || |||||||| ||| || ||||| || |||||||| ||||||||||||||
Sbjct 5944 AATCTTAGGAAAAGATTTCA-CCCAGAAATGAGCGAACGTGAAGCTGCACACTTCATGAT 6002
Query 1730 CCATGTCTGTACCGATGCCTACAACAAATGGACCAC-GTATGGGTACGACTTGATACAGT 1788
||||| ||||| || || || ||||| ||||| || | ||| ||||||||||| ||||
Sbjct 6003 TCATGTATGTACGGACGCATATAACAAGTGGACTACTGC-TGGATACGACTTGATTCAGT 6061
Query 1789 ATCTGCAACAAGGCATCGAGAAATAA 1814
|| ||||||||||||||||||| |||
Sbjct 6062 ATTTGCAACAAGGCATCGAGAAGTAA 6087
> AT1G51040.1 | Symbols: | Protein kinase superfamily protein
| chr1:18920658-18923314 FORWARD LENGTH=1578
Length=1578
Score = 821 bits (444), Expect = 0.0
Identities = 555/609 (91%), Gaps = 6/609 (1%)
Strand=Plus/Plus
Query 556 TGGTTGAAGGGTATCTTCTTAGAGCTACCCAAAGAAGTGACATATTTGCTCATATCCTCA 615
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 344 TGGTTGAAGGGTATCTTCTTAGAGCTGCCCAAAGAAGTGACATATTTGCTCATACCCTCA 403
Query 616 CGTGGCATTTGCAGGGTGAGTCTGTTCAGGAAACT-GTGAAAGATGGTGCTTTCGATAAG 674
|||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 404 TTTGGCATTTACAGGGTGAGTCTGTTGAGGAAA-TAGTGAAAGATGGTGCTTTCGATAAG 462
Query 675 AATACATCATTCCAAGCAATCTTGTCAGAGGTTCGACAGCATATCATTGATGGTTTTAGT 734
||| |||||||||||| |||||||||||| ||||| ||||||||| |||||||||| | |
Sbjct 463 AATGCATCATTCCAAGAAATCTTGTCAGACGTTCGGCAGCATATCGTTGATGGTTTCACT 522
Query 735 CCAAAGGCCTTGGACATGTTCAAAAGAGAGTTTGACTTCTTTGAAAAGGTTACATCTATT 794
|| ||||||||| | | |||| |||||||||||||||||||||||||| |||||||||
Sbjct 523 CCCAAGGCCTTGAATTTTTTCAGTAGAGAGTTTGACTTCTTTGAAAAGGTCACATCTATT 582
Query 795 TCTGGGGCATTGTTTCCTCTTCCAAAGGAAGAACGAAG-AGCTGGTATCAGGAGGGAGTT 853
||||||||||| |||||||||||||||||||||| || ||||||||| |||||||| ||
Sbjct 583 TCTGGGGCATTACTTCCTCTTCCAAAGGAAGAACG-AGTAGCTGGTATTAGGAGGGAATT 641
Query 854 GGAGAAAATCAAAATGCAAGGAGAAGACCTTTATTTGCCTACGGCTCCTAACAAGCTTGT 913
||||||||||||||||||||||||||| |||||| |||| || |||||||||||||| |
Sbjct 642 GGAGAAAATCAAAATGCAAGGAGAAGATCTTTATCTGCCGACTGCTCCTAACAAGCTCG- 700
Query 914 TAAGGG-TATCCAGATAGACAGTGGCATAACCCTTCAATCAGCTGCCAAAGTCCCTATCA 972
| |||| ||| ||| |||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 701 TCAGGGTTATTCAGGTAGACAGTGGAATACCCCTACAATCAGCTGCCAAAGTCCCTATCA 760
Query 973 TGATAACCTTTAACGTTGTTGATCGTGATGGTAACCAGAATGATGCGAAACCACAGGCTT 1032
|||||||||||||||||||||||| ||||||| |||| ||||||| |||||| || ||||
Sbjct 761 TGATAACCTTTAACGTTGTTGATCTTGATGGTGACCACAATGATGTGAAACCTCAAGCTT 820
Query 1033 GTATTTTCAAGGTTGGAGATGATTGCCGTCAAGATGTTCTTGCCCTTCAAGTGATATCGC 1092
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 821 GTATTTTCAAGGTTGGAGATGATTGCCGTCAAGATGTTCTTGCCCTGCAAGTGATATCTC 880
Query 1093 TTCTTAGAGACATATTTCAAGCGGTTGGTCTTAATCTTTATCTTTTTCCTTATGGAGTAC 1152
||||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 881 TTCTTGGAGACATATTTCAAGCTGTTGGTCTTAATCTCTATCTTTTTCCATATGGAGTAC 940
Query 1153 TTCCAACTG 1161
|||||||||
Sbjct 941 TTCCAACTG 949
Score = 593 bits (321), Expect = 2e-168
Identities = 530/632 (84%), Gaps = 10/632 (2%)
Strand=Plus/Plus
Query 1188 GTGCCAAATACACGAAGCAGAAGTCAAATGGGTGAATCAACCGATGGTGGCTTGTATGAG 1247
|||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||
Sbjct 952 GTGCCAAATACACGAAGCAGAAGTCAAATGGGTGAAACAACCGACGGGGGTTTGTATGAG 1011
Query 1248 ATCTTTCAAGAGGAGTTTGGACCCGTTGGCTCACCCTCCTTTGAAACGGCAAGGG-GTAA 1306
|| |||||| | | | ||||| |||||||||| || |||||||||| ||| | | | ||
Sbjct 1012 ATTTTTCAACAAAACTATGGACTCGTTGGCTCAACCACCTTTGAAACAGCACGAGCG-AA 1070
Query 1307 CTTCCTCACCAGCAGTGCTGGTTACGCGGTGGCGAGTCTTTTACTCCAGTCCAAAGACAG 1366
|||||||| |||||||| || || || ||||| ||||||||||||||| ||||||| ||
Sbjct 1071 CTTCCTCATAAGCAGTGCCGGGTATGCTGTGGCTAGTCTTTTACTCCAGCCCAAAGATAG 1130
Query 1367 ACACAACGGCAATCTCCTCTACGACAACATGGGAAGGCTTGTTCACATTGATTTTGGTTT 1426
||||||||| |||||||| | ||| || ||||||| ||||| ||||| || ||||||||
Sbjct 1131 ACACAACGGAAATCTCCTTTTCGATGACGTGGGAAGACTTGTCCACATCGACTTTGGTTT 1190
Query 1427 CATTTTTGAAACCTCCCCTGGTGGAAACATGCGTTTTGAGAGCGCACATTTCAAACTGAG 1486
|||||| ||||| || ||||||||||||||| | || || | || ||||||||||||||
Sbjct 1191 CATTTTGGAAACTTCACCTGGTGGAAACATGAGGTTCGAAAATGCTCATTTCAAACTGAG 1250
Query 1487 CCACGAAATGACACAGTTGCTTGATCCATCAGG-GAATATGAAGAGCGAATCTTGGCATC 1545
|||||||||||| |||||||| ||||| ||||| | |||||| ||| || | |||||||
Sbjct 1251 CCACGAAATGACCCAGTTGCTAGATCCTTCAGGTGT-TATGAAAAGCAAAACATGGCATC 1309
Query 1546 AGTTTGTGAGCTTGTGCGTGAAGGGTTACTTGGCTGCTCGCCGGTACATGGAGGGGATCA 1605
||||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||
Sbjct 1310 AGTTTGTGAGCTTGTGCGTCAAGGGATACTTAGCTGCTCGCCGGTACATGGACGAAATCA 1369
Query 1606 TCAGTACAGTGGAAATGATGGTGGAAAGTGGATTGCCTTGCTTCAGCAGAGGAGATCCAA 1665
| || || ||| |||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 1370 TTAGCACGGTGCAAATGATGCTAGAAAGTGGATTGCCTTGCTTTAGCAGAGGAGATCCAA 1429
Query 1666 TTGAGAAA-CTTCGCAAGAGATTTCATCCC-GAGATGAGTGAGCGTGAAGCCGCACACTT 1723
| | | || ||| | || ||||| || ||| || ||||| || |||||||| |||| |||
Sbjct 1430 TAG-GTAATCTTAGGAAAAGATTCCA-CCCAGAAATGAGCGAACGTGAAGCTGCACTCTT 1487
Query 1724 CATGATCCATGTCTGTACCGATGCCTACAACAAATGGACCAC-GTATGGGTACGACTTGA 1782
||||| |||| ||||||||||| || ||||||||||| || | ||| || |||||||
Sbjct 1488 TATGATTAATGTATGTACCGATGCTTATAACAAATGGACTACTGC-TGGATATGACTTGA 1546
Query 1783 TACAGTATCTGCAACAAGGCATCGAGAAATAA 1814
| |||||| ||||||||||| | ||||| |||
Sbjct 1547 TTCAGTATTTGCAACAAGGCGTTGAGAAGTAA 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90762585360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5