BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952041
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30600.1 | Symbols: | Subtilase family protein | chr1:10841... 1074 0.0
> AT1G30600.1 | Symbols: | Subtilase family protein | chr1:10841142-10845050
REVERSE LENGTH=2842
Length=2842
Score = 1074 bits (581), Expect = 0.0
Identities = 681/730 (93%), Gaps = 4/730 (1%)
Strand=Plus/Plus
Query 29 ACTCCGGTATTACAATTCTTCTCTGTTGAGGGAGAATGGTTCAGGCAAAATAGTTGGGTC 88
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct 1674 ACTCCGGTATTACAATTCTTCTCTGTTGAGGGAAAATGGTTCAGGGAAGATTGTTGGGTC 1733
Query 89 TGCATCAGTTGCTAGAATTGTTGGTGGCATGAAGCCTACCTATAGCATTACTGCTCCCAA 148
||| || ||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 1734 TGCGTCTGTTGCTAAAATTGTTGGTGGCATGAGGCCTACCTATGGCATTACAGCTCCCAA 1793
Query 149 GGTCATGTATTTCTCAGCTAGAGGACCTGACCCAGAAGATGATTCTTTCGTTGATGCTGA 208
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GGTCATGTATTTCTCTGCTAGGGGACCTGACCCAGAAGATGATTCTTTCGTTGATGCTGA 1853
Query 209 TATAATGAAACCCAACTTAGTAGCTCCCGGAAATGCGATATGGGGCGCTTGGAGTCCTCT 268
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1854 TATAATGAAACCCAACTTAGTAGCTCCCGGAAACGCGATATGGGGAGCTTGGAGTCCTCT 1913
Query 269 TGGCATTGGTACAACCGATTTTCAAGGTGAACGATTTGTAATGAAATCGGGGACAAGCAT 328
|||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 1914 TGGCATTGGTACAAATGATTTTCAAGGTGAACGTTTTGCGATGGAATCGGGGACAAGCAT 1973
Query 329 GTCTGCTCCACATGTAAC-GGGTATTTCGGCGCTCATCAAACAAAAGTTCCTACATTTCA 387
|||||||||||||||||| ||| ||| ||||||||||||| || ||||||| ||||||||
Sbjct 1974 GTCTGCTCCACATGTAACCGGG-ATTGCGGCGCTCATCAAGCAGAAGTTCCCACATTTCA 2032
Query 388 CTCCTGCAGCCATTGCATCCACACTTTCAACAACAGCTTCTCTATCAGACAGAAAGGGTG 447
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 2033 CTCCTGCAGCCATTGCATCCGCACTTTCAACAACGGCTTCTCTATCAGACAGAAAGGGTG 2092
Query 448 AGCATATAATGGCACAACGCACTGTCTTAAACCCCGACATTAGTCAGTCCCCTGGAACAC 507
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2093 AGCATATAATGGCGCAACGCACTGTCTTAAACCCCGACATTAGTCAGTCCCCTGCAACAC 2152
Query 508 C-TTTCGATATAGGTAGCGGATTCGTCAATGCAACTGCAGCTCTTGACCCTGGTTTGATT 566
| ||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2153 CGTTT-GATATGGGTAGCGGATTTGTTAATGCAACTGCAGCTCTTGACCCTGGTTTGATT 2211
Query 567 TTCGACATAGGTTACAATGAATACATGAAGTTTCTCTGTAGCATCAACGGATCATCTCCA 626
|| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2212 TTTGACATAGGTTACAATGAATACATGAAGTTTCTCTGTGGTATCAACGGATCATCTCCA 2271
Query 627 GTTGTTCTCAACTTCACCGGTGAAAGCTGCTCGGCGTACAACTCCTCCCTTGCAGCCTCT 686
|| |||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 2272 GTCGTTCTCAACTACACCGGTGAAAGCTGCTCGTCATACAACTCTTCCCTTGCAGCCTCT 2331
Query 687 GACTTGAACGTACCCTCAGTCACAATAGCTAAACTAGTTGGTACTCGAACTGTACTAAGA 746
||||||||| ||||||||||||||||||||||||| ||||| |||||| | || ||||||
Sbjct 2332 GACTTGAACCTACCCTCAGTCACAATAGCTAAACTCGTTGGGACTCGAGCCGTCCTAAGA 2391
Query 747 TGGGTGACTA 756
||||||||||
Sbjct 2392 TGGGTGACTA 2401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5