BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952043

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54590.2 | Symbols: CRLK1 | Protein kinase superfamily prote...   200    1e-50


> AT5G54590.2 | Symbols: CRLK1 | Protein kinase superfamily protein 
| chr5:22180480-22182698 FORWARD LENGTH=1323
Length=1323

 Score =  200 bits (108),  Expect = 1e-50
 Identities = 149/168 (89%), Gaps = 6/168 (4%)
 Strand=Plus/Plus

Query  501  AACATGCTGCTAACATCAGAGGAGCATTTGGTTATCTCGATCCCGAATACGTTTCCACAA  560
            ||||||| ||||||||||||||| ||||||| || ||||||||||||||| |||| ||||
Sbjct  797  AACATGCAGCTAACATCAGAGGAACATTTGGCTACCTCGATCCCGAATACATTTCAACAA  856

Query  561  GAACATAT-ACCAAGAAAAGAGTTGTTTATGGCTCCTGG-GTTTTACTCTTT-GAGCTTA  617
            |||||| | ||||||||||| | ||| ||||||| | || ||||| || ||| |||||||
Sbjct  857  GAACAT-TCACCAAGAAAAGCGATGTCTATGGCTTC-GGAGTTTTGCT-TTTCGAGCTTA  913

Query  618  TAGCTGGAAGAAATCCTCAACAAGGTCTAATGGAATTTGTTGAGCTGG  665
            |||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  914  TAGCAGGAAGAAATCCTCAACAAGGTCTAATGGAATTGGTTGAGCTGG  961


 Score =  158 bits (85),  Expect = 9e-38
 Identities = 123/140 (88%), Gaps = 7/140 (5%)
 Strand=Plus/Plus

Query  137  GATTTGCAAAAAGCAACTTGTAACTTT-ACTACTTTGATTGGCCAAGGAGCATTTGGACC  195
            |||||||| ||||| || ||||| ||| || |||||||| ||||||||||||||||||||
Sbjct  319  GATTTGCAGAAAGCGACGTGTAA-TTTCACGACTTTGATAGGCCAAGGAGCATTTGGACC  377

Query  196  TGTCTACAAAGCTCAAATGTCTACCAGTGAGA-CGGTAGCTGTGAAAGTTCTTGCCACTT  254
            ||||||||||||||||||||||||  |||||| || | |||||||||||||| |||||| 
Sbjct  378  TGTCTACAAAGCTCAAATGTCTACTGGTGAGATCG-TGGCTGTGAAAGTTCTAGCCACTG  436

Query  255  ATTCTA--CAGG-CGAAAAA  271
            ||||||  |||| |||||||
Sbjct  437  ATTCTAAACAGGGCGAAAAA  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34159219960


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5