BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952051
Length=3392
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31570.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Prefoldin... 3408 0.0
> AT4G31570.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Prefoldin
(InterPro:IPR009053); BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast
hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria
- 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589;
Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink).
| chr4:15297014-15306410 FORWARD LENGTH=8511
Length=8511
Score = 3408 bits (1845), Expect = 0.0
Identities = 2330/2554 (91%), Gaps = 73/2554 (3%)
Strand=Plus/Plus
Query 1 GGAACAAGAACAGAGTAAATCAAATGGACAAGAAAAAGAACCGTGCTGATCCACTTGCTG 60
|||||||||||| ||| |||| |||||||||||||||||||||||||||||| |||||||
Sbjct 25 GGAACAAGAACACAGTGAATCGAATGGACAAGAAAAAGAACCGTGCTGATCCGCTTGCTG 84
Query 61 CTGGGCGCCACAAGCTTCAACAATTTCGTCAAAAGAAGGCTGACAAAGGCACTGATCAGA 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 CTGGGCGCCAGAAGCTTCAACAATTTCGTCAAAAGAAGGCTGACAAAGGCACTGATCAGA 144
Query 121 AAAAGGACTCCAAAGGCAGTACAAGCCAAGGCAAATCCTCCAAAAAATC---T-AA--T- 173
||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 145 AAAAGGACTCCAAAGGCAGTACAAGCCAAGGCAAATCCTCCAAAAAATCTAATAAATCTG 204
Query 174 A-AATC-TGA--G--AA---G-CA-T-GAGC-GT-A--AACCTGACACTAG-TGC-T-GT 214
| || | ||| | || | || | | || || | || | ||| || | | |
Sbjct 205 AGAAGCATGAGCGTAAACCTGACACTAGTGCTGTCAGTGACGAGGCACAAGCTCCATCCC 264
Query 215 CAGTGAC-G-AGGCACAAGCTCCATCCCATGTCAATGTTGCTGAGGAGGTTGTCGATTCT 272
| ||||| | ||| | |||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 265 CTGTGACTGTAGG-AGGAGCTACATCTCATGTGAATGTTGCTGAGGAGGTTGTCGATTCT 323
Query 273 CCACAAACTTCTTCACATACAAAAGCTCACGAATATGTTTCAGTCCATGGTTCATCATCA 332
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 324 CCACAAACTTCTTCAGATACAAAAGCTCACGAATATGTTTCAGTCCATGGTTCCTCATCA 383
Query 333 GAACCTGATATGCCTCAGCCAGGAAACACCACTTCTGATGATGTATCTGAAGTGAGAAAA 392
|| |||||| || |||||||||| ||||||||||| |||||| |||||||| |||||||
Sbjct 384 GAGCCTGATGCGCTTCAGCCAGGACACACCACTTCTAATGATGGATCTGAAGCGAGAAAA 443
Query 393 GAAGTAGTTAATTCTGAAAACGATATCAGTATATCTTTATCCACTGAAGAAGAGAATATG 452
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 444 GAAGTAGTTAATTCTGAAAATGATATCAGTAAATCTTTATCCACTGAAGAAGAGAATGTG 503
Query 453 AAGTCTATCAACGGTGGAGTTGCTGGCACAGTAGG-TTCTTTGACATCTGACACTGCAGT 511
|||||||||||| ||||||| ||||||||||| || |||||||| ||||||| ||||||
Sbjct 504 AAGTCTATCAACAGTGGAGTGGCTGGCACAGT-GGATTCTTTGATATCTGACCCTGCAGA 562
Query 512 TTCTGAGAAGGGAGTTACTCATGACGATGCATCTATTAATGTTGACGGAATCTTTACGT- 570
|||||||||||||||||| |||||||||||||| ||||||||| ||||||||| | |
Sbjct 563 TTCTGAGAAGGGAGTTACACATGACGATGCATC---TAATGTTGATGGAATCTTTGC-TG 618
Query 571 CTTCTGGAAACATAGCGGAGGGGGAAGGAGTTGAAGTTGAAGGTGGGTCTGGAAATGTGG 630
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 619 CTTCTGGAAACATAGCGGAGGGGGAAGGTGTTGAAGTTGAAGGTGGTTCTGGGAATGTGG 678
Query 631 AAAAGCCGCATCAGCCATCCTCTCTCCATGAAGGCATTCCTGATGTTTCCTTGATTCGTG 690
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 679 AAAAGCCGCATCAGCCATCCTCTCTCCAAGAATATATTCCTGATGTTTCCTTGATTCGTG 738
Query 691 CAAGGGGAGATCAGG-AA--GA---A--GG---T---GGTTCACG-CATGGAGCAGTTTT 735
||||||||||||||| || || | || | || | | ||||||||||||||
Sbjct 739 CAAGGGGAGATCAGGTAACTGATGTAGGGGAAATGCAGGAAGAAGACATGGAGCAGTTTT 798
Query 736 CTGAATCATCTGCAAAGGCAGGTGTGGATAAGATTGCAACTGAAGAAAGGCAAACAAGCT 795
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 799 CTGAATTATCTGCAAAGGCAGGCGTGGATAAGATTGCAACTGAAGAAAGGCAAACAAGCT 858
Query 796 ATCCAGCTGTTGTGGATTTATCTGCTTCTCCTTCACATTTTTCAGAGGGATCCTCAGTTG 855
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 859 ATCCAGCTGTTGTGGATTCATCTGCTTCTCCTTCACACTTTTCAGAGGGATCCTCAGTTG 918
Query 856 CATTAGATTCAGTTGAACTAGAAGG-ACAAAATGGTAATATTAGAAGCCAACAGATGAGG 914
| || ||| |||||||||||||||| | ||| ||||||| |||||||||||||||| ||
Sbjct 919 CCTTTGATACAGTTGAACTAGAAGGTATAAA-TGGTAATTTTAGAAGCCAACAGATTAGA 977
Query 915 GAAGCTGCAGAGCTTAATGAAGAGAAACCAGAAACATCTATTGATTTTCCTAATGATAGA 974
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 978 GAAGCTGCAGAGCTTAACGAAGAGAAACCAGAAACATCTATTGATTTTCCTAATAACAGA 1037
Query 975 GATCACGTGCTTTCAGCTGAACCTGAGGAAAGCTCTGTTGCAGATATGGCTAGTCAGCTG 1034
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1038 GATCACGTGCTTTCAGCTGAACCTGAGGAAAGCTCTGTTGCAGAAATGGCCAGTCAGCTG 1097
Query 1035 CAATTGCCTGAGAGCATCAGTATATCTGGA-TTAGTGAGCCATGAGGAACCTCAAAAAAT 1093
||||||||||||||| |||||||||||||| || ||||||| |||||| ||| |||||
Sbjct 1098 CAATTGCCTGAGAGCGTCAGTATATCTGGAGTTT-TGAGCCACGAGGAAACTCGTAAAAT 1156
Query 1094 CGACACATTGAATTTATCTGGAGAAGTTTCCGT-TGCTCATGTTCATGAAGGCCCCTCAT 1152
||||||||||||||||||| |||| || || | |||||||||||||||||||| ||||
Sbjct 1157 TGACACATTGAATTTATCTGCAGAACTTACC-TCTGCTCATGTTCATGAAGGCCGCTCAG 1215
Query 1153 TCAGCTTCTTACAGCTTATTGATATTGTTAAAGGACTTGGCCAAGACGAATATCAAATTT 1212
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 1216 TCAGCTTCTTACAGCTTATGGATATTGTAAAAGGACTTGGCCAAGATGAATATCAAATTT 1275
Query 1213 TGTGCAACGCAAGAGAGGCTGCTTCCAGTACTGAGCCAGGAACAAGTTCGTTGGAGCGAG 1272
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1276 TGTGCAACGCAAGAGAGGCTGCTTCTAGTACTGAGCCAGGAACAAGTTCGTTGGAGCGAC 1335
Query 1273 TAAGAGAAGAACTGTTTGTTTCGAGTACCATGGAAGATTTACTCCACGTGCAACTCACAG 1332
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1336 TAAGAGAAGAACTGTTTGTTTCGAGTACCATGGAAGATATACTCCATGTGCAACTCACAG 1395
Query 1333 AACAGTCTCATCTGCAAA-AGGAGTTTGATCATCAACATAACGAATTGGTAGCTGAAATA 1391
||||||||||||| |||| || |||||||||||||||||||| |||| ||||||||||||
Sbjct 1396 AACAGTCTCATCTACAAATAG-AGTTTGATCATCAACATAACCAATTTGTAGCTGAAATA 1454
Query 1392 TCACAGCTTCGTGCATCATATAATGCAGTGATAGAGAGAAATGATTCTCTTGCGGAGGAA 1451
|||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 1455 TCACAGCTTCGTGCATCATATAGTGCGGTGACAGAGAGAAATGATTCTCTTGCGGAGGAA 1514
Query 1452 CTA-CTAGAGTGGCAGTCTAAACTCTATGCTGCTACTAGCTCTAATGA-GAACCTTGAAA 1509
||| | |||||| ||||||||||||||||||||||| ||||| || | |||||||||||
Sbjct 1515 CTATC-AGAGTGCCAGTCTAAACTCTATGCTGCTACAAGCTCAAAC-ACGAACCTTGAAA 1572
Query 1510 ATCAGCTTCTTGCTACAGAAGCTCAAGTGGAGGATTTCACTGCTAAGATGAATGACTTGC 1569
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1573 ATCAGCTTCTTGCTACAGAAGCACAAGTGGAGGATTTCACTGCTAAGATGAATGAGTTGC 1632
Query 1570 AGCTTAGCCTAGAAAAGTCCCTGTTGGATCTATCTGAGGCGAAAGAAAAGTGCATTAATC 1629
|||||||||||||||||||||||||||||||||||||| | |||||||| | ||||||||
Sbjct 1633 AGCTTAGCCTAGAAAAGTCCCTGTTGGATCTATCTGAGACAAAAGAAAAATTCATTAATC 1692
Query 1630 TTCAGGTGGAGAATGATACGTTGGTTGCAATTATTTCTTCCGTGAATGATGAGAAAAAAG 1689
||||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||| |
Sbjct 1693 TTCAGGTAGAGAATGATACGTTGGTTGCAGTTATATCTTCCATGAATGATGAGAAAAAGG 1752
Query 1690 AACTTCTTGAAGAAAAAGAATCCAAGAACTATGAGATTAAGCATCTTTCATCTGAGTTAT 1749
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 AACTTATTGAAGAAAAAGAATCCAAGAACTATGAGATTAAGCATCTTTCATCTGAGTTAT 1812
Query 1750 TG-AATTGCAAGAACCTGGCGGCTATACTAAAGGCAGAAGTTGAGCAATTGGAAAACACT 1808
| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1813 -GCAATTGCAAGAACCTGGCGGCCATACTAAAGGCAGAAGTTGAGCAATTTGAAAACACT 1871
Query 1809 ATTGGTCCATTAACAGATGAGAAGATACATCTTGTGGAGGAAAGATATAGTTTATTGGGT 1868
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1872 ATTGGTCCATTAACAGATGAGAAGATACATCTTGTGGAGGAAAAATATAGTTTATTGGGT 1931
Query 1869 GAGGCAGAGAACTTACAGGAAGAATTGGCAAATTGTAAGAC-GTTGGTCACCCTGCAAGA 1927
||||| || || ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1932 GAGGCCGAAAAGTTACAGGAAGAATTGGCAAATTGTAAGACCGT-GGTCACCCTGCAAGA 1990
Query 1928 GGTGGAAAATTCAAACAT-AAGGGAGACGCTTTCTTTACTGACAGGCCAACAGACTAAGT 1986
||||||||| |||||||| |||| |||||||||||||||||||| |||| ||||||| ||
Sbjct 1991 GGTGGAAAACTCAAACATGAAGG-AGACGCTTTCTTTACTGACACGCCAGCAGACTATGT 2049
Query 1987 TTGAAGAGAACAACCTACATCTCAGAGAAGAAAATGAGAAAGCACATCTAGAACTTAGTG 2046
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2050 TTGAAGAGAACAACATACATCTCAGAGAAGAAAATGAGAAAGCACATCTAGAACTGAGTG 2109
Query 2047 CACATCTGATCTCGGAGACTTATTTATTGTCCGAGTATTCCAATCTAAAGGAAGGATATT 2106
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2110 CACATCTGATCTCGGAGACTTATTTATTATCCGAGTATTCCAATCTAAAGGAGGGATATA 2169
Query 2107 CTTTGTTGAATAATAAGCTCTTGAAGTTTCAAGGGGAAAAGGAACATTTGATTGAGGAAA 2166
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2170 CTTTGTTAAATAATAAGCTCTTGAAGTTTCAAGGGGAAAAGGAACATTTGGTTGAGGAAA 2229
Query 2167 ATGATAAACTTACACATGAACTTCTTACTCTTCAAGAGCGTACGTCAATTGTAGATGAAG 2226
|||||||||||||||| |||||||||||||||||||||| | ||||| |||||| ||||
Sbjct 2230 ATGATAAACTTACACAGGAACTTCTTACTCTTCAAGAGCACATGTCAACTGTAGAAGAAG 2289
Query 2227 AGCGGAGTCATCTAGAAGTTGAGTTAAGAGAAGCAATAGCGCGCCTTGATAAATTGACTG 2286
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2290 AGCGGACTCATCTAGAAGTTGAGTTAAGAGAAGCAATAGCGCGCCTTGATAAATTGGCTG 2349
Query 2287 AAGAAAATACATCTTTAACTAGCAGCATCATGGTAGAAAAAGCTAGAATGGTAGACATTG 2346
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 2350 AAGAAAATACATCTTTAACTAGCAGCATCATGGTAGAAAAAGCAAGAATGGTAGACAATG 2409
Query 2347 GTAGCG-AGGATGCT-TCAGGTTTGATCAATCAGGAAATTTCTGAGAAACTTAGTGGAAG 2404
|||||| || ||| | ||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 2410 GTAGCGCAG-ATG-TGTCAGGGTTGATCAATCAGGAAATTTCTGAGAAACTTGGTAGAAG 2467
Query 2405 TTCAGAAGTCGTGGTTAGTAAACAGGGTGCATCTCTTCTTGAAAATACACAATATACAAA 2464
||| ||| ||| ||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 2468 TTCGGAAATCGGGGTTAGTAAACAGAGTGCATCTTTTCTTGAAAATACGCAATATACAAA 2527
Query 2465 TTCGAAAGAGGTAATGGAAGATACTTCTGAGTTT 2498
|| | ||||||| | |||| ||||||||||||||
Sbjct 2528 TTTGGAAGAGGTTAGGGAATATACTTCTGAGTTT 2561
Score = 1264 bits (684), Expect = 0.0
Identities = 777/823 (94%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 2501 CGATAAAGGTGCCACACCAGCAGTATCAAAATTGATTCAAGCTTTTGAGTCAAAACGGAA 2560
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2663 CGATAAAGGTGCCACGCCAGCAGTATCAAAACTGATTCAAGCTTTTGAGTCAAAACGGAA 2722
Query 2561 ACCAGAAGAACATGAATCTGAGAACGCACAGTTAACTGATGATCCATCAGAAGCAGATCA 2620
||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2723 ACCAGAAGAACCTGAATCTGAGAATGCACAGTTAACTGATGATCTGTCAGAAGCAGATCA 2782
Query 2621 ATTTGTTTCTGTGAATGTGCAGATTAGAAATTTGAGAGGCTTGCTTCATCAGTTACTGTT 2680
|||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 2783 ATTTGTTTCTGTTAATGTGCAGATTAGAAATTTGAGAGGTTTGCTTGATCAGTTACTGTT 2842
Query 2681 GAATGGTAGGAAGGCTGGTATACAATTCAAGCAGTTAAATGATGACAGGACATCAACAAA 2740
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2843 GAATGCTAGGAAGGCTGGCATACAATTCAACCAGTTAAATGATGACAGGACATCGACAAA 2902
Query 2741 TCAAAGACTCGAGGAGTTAAATGTCGAGTTTGCATCTCATCAGGATCACATTAATGTTCT 2800
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 2903 TCAAAGACTCGAGGAGTTAAATGTTGAGTTTGCATCACATCAGGACCACATTAATGTTCT 2962
Query 2801 GGAGGCAGATACTATTGAGAGTAAGATTTCATTTGAAGCTCTGAAGCATTATTCGTATGA 2860
||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 2963 GGAGGCAGATACTATTGAGAGTAAGGTTTCGTTCGAAGCTCTGAAGCATTATTCGTATGA 3022
Query 2861 GTTGCAACATAAAAACAATGAACTTGAACTTCTCTGTGATTCATTAAAGCTAAGAAATGA 2920
| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3023 GCTGCAACATAAAAACCATGATCTTGAACTTCTCTGTGATTCATTAAAGCTAAGAAATGA 3082
Query 2921 TAATGTCGGTGTAGAAAACACGGAGCTCAAGAAGAAGCTGAATTCTTGCTTATTGAGAAT 2980
|||| || |||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 3083 TAATATCAGTGTAGAAAACACGGAGCTCAATAAGAAGCTGAATTATTGCTCATTGAGAAT 3142
Query 2981 TAATGAGCTTGAAATTCAGCTGGAAAACTTACAGCAGAATTTAAGTAGCTTTTTGTCCTC 3040
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 3143 TGATGAGCTTGAAATTCAGCTGGAAAACTTACAGCAGAATTTAACTAGCTTTTTGTCCAC 3202
Query 3041 AATGGAAGAACAGTTAGTGGCCTTGCAGGATGAATCTGAGAGGGCAATGATGCTAGAACA 3100
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 3203 AATGGAAGAACAGTTAGTGGCCTTGCAGGATGAATCTGAGCGGGCAATGATGGTAGAACA 3262
Query 3101 TGAACTGACATCATTGATGTCTGAATTTGGTGAAGCAGTTGTAAGGCTTGATGATTGTTT 3160
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3263 TGAATTGACATCATTGATGTCTGAATTTGGTGAAGCAGTTGTGAGGCTTGATGATTGTTT 3322
Query 3161 ACTCAGATCTGGCACTTCTGGAGCTAATGCTGGCTTAGATATGACCAAGCGCATATCTGG 3220
||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 3323 ACTCAGATCTGGCACTTCTGGAGCTCATACTGGCTTAGATATGACCAAACGCATATCTGG 3382
Query 3221 TTCTGTTGATGTGGCTGTAAAGGTGATTGACGACCTGGAGGAAAAACTTGAAGCTGCTTA 3280
||||||||||||||||||||| |||||||| ||||| |||||||||| ||||| |||||
Sbjct 3383 TTCTGTTGATGTGGCTGTAAACGTGATTGAAGACCTCAAGGAAAAACTAGAAGCAGCTTA 3442
Query 3281 TGTGAAGCATGAGTCCACGTCAAATCAA-TATGAGGAATTGAA 3322
|||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 3443 TGTGAAGCATGAGTCCACCTCAAA-CAAATATGAGGAATTGAA 3484
Score = 119 bits (64), Expect = 2e-25
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 3323 CTTCTTCAATGCAGAAGGTCTATGCCGATCTGACGAAATTGATTACTGAATCATGTGGGT 3382
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3526 CTTCTTCAATGCAGAAGGTCTATGCTGATCTGACGAAATTGATTACTGAATCATGTGGGT 3585
Query 3383 CAGTGGAGAT 3392
||| ||||||
Sbjct 3586 CAGCGGAGAT 3595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 168811763195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5