BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952054

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46250.1 | Symbols:  | myosin heavy chain-related | chr2:189...   737    0.0  


> AT2G46250.1 | Symbols:  | myosin heavy chain-related | chr2:18991171-18993327 
FORWARD LENGTH=1748
Length=1748

 Score =  737 bits (399),  Expect = 0.0
 Identities = 442/462 (96%), Gaps = 6/462 (1%)
 Strand=Plus/Plus

Query  1     TGTGGAATGACCAGAGATTACAAATGAAGCTAGAGGAAGATGATAAAACA-TT-TT-TGC  57
             |||||| ||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct  1165  TGTGGAGTGACCAGAGATTACAAATGAAGCTAGAGGAAGATGATAAAACATTTCTTCTGC  1224

Query  58    GAGCTAAGGAGAAGAGTAGATCACAGTCAAGTAAAGGAAGTGGCTTGAGAGCAAAACCAG  117
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1225  GAGCTAAGGAGAAGAGTAGATCACAGTCAAGTAAAGGAAGTGGCTTGAGAGCAAAACCAG  1284

Query  118   ATGATTCGGTTTCTATGCATCAGAGGGTTTGCTTGAAGGAACTTGAAGAAGGGCTTGAAA  177
             |||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct  1285  ATGATTCGGTATCTATGCATCAAAGGGTTTGCCTGAAGGAACTCGAAGAAGGGCTTGAAA  1344

Query  178   AGCGAACAAGAAGAGATAACAAATTGCAGCTTAAGAAGAAGAGCTCAGGCCAAGTTTTTA  237
             ||||||||||||||||||||||| ||||||||   ||||||||||||||||||||| |||
Sbjct  1345  AGCGAACAAGAAGAGATAACAAACTGCAGCTT---AAGAAGAGCTCAGGCCAAGTTCTTA  1401

Query  238   ATCTATCTATGTCTTCGGAAGGAGATAAGATTCATCCAGAGAGTAGTCCAAGGAACGTTG  297
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1402  ATCTATCTATGTCTTCGGAAGGAGATAAGATTCATCCAGAGAGTAGTCCAAGGAACGTTG  1461

Query  298   ATGATCATGAGAGTCAAGAAAAGTCTAGAACTTTCTCGAAGATTCTTCCGAGAAATGTGA  357
             |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  1462  ATGATCATGAGAGTCAAGAAAAGTCTAGAACTTTCTCGAAGAATCATCCGAGAAATGTGA  1521

Query  358   ATGTGATGATCAGAGAGGATAATCATCGTACTCTCAAGGATAAGCTGATGGAAGCTCGTG  417
             ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1522  ATGTGATGATCAGGGAAGATAATCATCGTACTCTCAAGGATAAGCTGATGGAAGCTCGTG  1581

Query  418   TCGAGAGTCGACGTTTACGTTCTTCTTCGAAACCAGAGTGAT  459
             | || |||||||||||||||||||||| ||||||||||||||
Sbjct  1582  TAGAAAGTCGACGTTTACGTTCTTCTTTGAAACCAGAGTGAT  1623



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22756068591


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5