BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952058

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G36130.1 | Symbols:  | Ribosomal protein L2 family | chr4:17...   233    4e-61


> AT4G36130.1 | Symbols:  | Ribosomal protein L2 family | chr4:17097565-17098879 
FORWARD LENGTH=1048
Length=1048

 Score =  233 bits (126),  Expect = 4e-61
 Identities = 138/144 (96%), Gaps = 0/144 (0%)
 Strand=Plus/Plus

Query  19   AGGATGAAGTTGTCATCGGGTTCGAAGAAGATTGTGCCAAGTGGATGCATGGCCATGATT  78
            ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  487  AGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTGCCAAGTGGATGCAGGGCCATGATT  546

Query  79   GGTCAAGTTGCAGGTGGTGGAAGAACTGAGAAGCCGATGCTAAAGGCTGGTAACACATAC  138
            |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct  547  GGTCAAGTTGCAGGTGGTGGAAGAACAGAGAAGCCGATGCTCAAGGCTGGTAACGCATAC  606

Query  139  CACAAGTACCGTGTGAAGAGAAAC  162
            ||||||||||||||||||||||||
Sbjct  607  CACAAGTACCGTGTGAAGAGAAAC  630



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9255448584


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5