BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952059
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48750.1 | Symbols: | Cytochrome b561/ferric reductase tran... 518 6e-146
> AT5G48750.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
with DOMON related domain | chr5:19770052-19770819
REVERSE LENGTH=768
Length=768
Score = 518 bits (280), Expect = 6e-146
Identities = 359/398 (90%), Gaps = 2/398 (1%)
Strand=Plus/Plus
Query 313 GGCTACTCACCTACGCTTCAAGAAGGTCCTCTCAGCTTCCGTGTATTGCAACTATCCGGT 372
|||||| |||||| |||||||||||| ||||| ||||| |||||| ||||||||||| |
Sbjct 361 GGCTACACACCTATGCTTCAAGAAGGCCCTCTGAGCTTTCGTGTAACGCAACTATCCGCT 420
Query 373 GAATATCTCAATGGAGAGATGACTATATTTGCTACTATAGTGTTGCCTTCTAACATAACC 432
|||||||||||| ||||||||||||||||||| ||||| |||| ||| ||||||| ||||
Sbjct 421 GAATATCTCAATAGAGAGATGACTATATTTGCCACTATGGTGTGGCCGTCTAACACAACC 480
Query 433 GTCGTGAATCATTTATGGCAAGACGGTCCTTTGAAGGAAGGTGATAGACTTGGGATGCAC 492
|| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 481 GTTGTCAATCATTTATGGCAAGACGGTCCGTTGAAGGAAGGTGATAGGCTTGGGATGCAC 540
Query 493 GCCATGAGTGGAGATCATCTTAAATCCACGGCTACTTTGGATTTGCTGTCCGGACAAGTC 552
|||||||||||| ||||||| ||||||| ||||| |||||||||| ||||||||||||||
Sbjct 541 GCCATGAGTGGAAATCATCTCAAATCCATGGCTAATTTGGATTTGTTGTCCGGACAAGTC 600
Query 553 ACGACCTCAAAAGCAGCTAACGATAACATGTTACTAGTCAAAAATATCCATGGACTAGTG 612
| |||| | ||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 601 ATGACCACTAAAGCAGCTAATGATAACATGTTACTAGTCAAAAGCATTCATGGACTAGTG 660
Query 613 AACGCGGTGTGTTGGGGTATTTTCATGCCTATTGGTGTCATAGCTGCAAGGTACATGAGG 672
|| || ||||||||||| |||||||| || ||||||||||| ||||||||||||||||||
Sbjct 661 AATGCAGTGTGTTGGGGGATTTTCATACCCATTGGTGTCATGGCTGCAAGGTACATGAGG 720
Query 673 ACCTACAAAGGACTGGATCCCA-TGTGGTTCTACATAC 709
||||||||||||||||| |||| | |||||||||||||
Sbjct 721 ACCTACAAAGGACTGGACCCCACT-TGGTTCTACATAC 757
Score = 335 bits (181), Expect = 6e-91
Identities = 254/289 (88%), Gaps = 5/289 (2%)
Strand=Plus/Plus
Query 22 ATGTCTT-TGTCTCCGAGAACAACCGTTTTTGTGGTTTTGTGTTTTCTGTTCGTGCTCGC 80
|||| || ||||| ||||||| | ||||||||| |||||||||||||||||| | ||
Sbjct 1 ATGT-TTCTGTCTTCGAGAACTA---TTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGC 56
Query 81 TCCATACTTCACTAGAGCAACAACCGATGAACTTCAAGCTAGATGCGAGTCACACAGCTT 140
||||| ||| ||||||||||||||| ||||| |||||| ||| ||||| || |||| |||
Sbjct 57 TCCATGCTTTACTAGAGCAACAACCAATGAAGTTCAAGTTAGCTGCGACTCTCACAACTT 116
Query 141 TAACAACGGCAAACACTTCCGTTCATGCGTTGACCTTCCCGTGTTAGATTCTTTTCTACA 200
||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 117 CAACAATGGCAAACACTTCCGTTCATGTGTTGACCTTCCTGTGTTAGATTCGTTTCTACA 176
Query 201 CTTCAGTTACGTTCGAGAAACCGGAGTGCTTGAAGTTGCGTATCGTCACATCAACGTTGA 260
|| |||||||||||||||||||||||||||||||||||| |||||||| | |||| | ||
Sbjct 177 CTACAGTTACGTTCGAGAAACCGGAGTGCTTGAAGTTGCATATCGTCATACCAACATCGA 236
Query 261 ATCTTCTAGTTGGATCGCTTGGGGGATAAACCCGACAAGCAAAGGCATG 309
|||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 237 GTCTTCTAGTTGGATTGCTTGGGGCATAAACCCGACGAGCAAAGGCATG 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5