BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952060
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48750.1 | Symbols: | Cytochrome b561/ferric reductase tran... 848 0.0
> AT5G48750.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
with DOMON related domain | chr5:19770052-19770819
REVERSE LENGTH=768
Length=768
Score = 848 bits (459), Expect = 0.0
Identities = 647/739 (88%), Gaps = 8/739 (1%)
Strand=Plus/Plus
Query 47 TTTTTGTGGTTTTGTGTTTTCTTTTCGTGCTCGCTCCATACTTCGCTAGGGCAACAACCG 106
||||||||| |||||||||||| ||||| | ||||||| ||| |||| |||||||||
Sbjct 23 TTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGCTCCATGCTTTACTAGAGCAACAACCA 82
Query 107 ATGAACTTCAAGCTAGATGCGACTCACACAGCTTTAACAACGGCAAACACTTCCGTTCAT 166
||||| |||||| ||| |||||||| |||| ||| ||||| |||||||||||||||||||
Sbjct 83 ATGAAGTTCAAGTTAGCTGCGACTCTCACAACTTCAACAATGGCAAACACTTCCGTTCAT 142
Query 167 GCGTTGACCTTCCCGTGTTAGATTCTTTTCTACACTTCAGTTACGTTCGAGATACAGGAG 226
| ||||||||||| ||||||||||| |||||||||| ||||||||||||||| || ||||
Sbjct 143 GTGTTGACCTTCCTGTGTTAGATTCGTTTCTACACTACAGTTACGTTCGAGAAACCGGAG 202
Query 227 TGCTTGAAGTTGCGTATCGTCACATCAACGTAGACTCTTCTAGTTGGATCGCTTGGGGGA 286
||||||||||||| |||||||| | |||| | || |||||||||||||| |||||||| |
Sbjct 203 TGCTTGAAGTTGCATATCGTCATACCAACATCGAGTCTTCTAGTTGGATTGCTTGGGGCA 262
Query 287 TAAACCCGACAAGCGAAGGCATG-TCAGGTTCTCAAACTCTCTTAGCTTATCGTAATTCC 345
|||||||||| ||| |||||||| | |||| ||||||| || || ||||| ||||| |||
Sbjct 263 TAAACCCGACGAGCAAAGGCATGAT-AGGTGCTCAAACACTTTTGGCTTACCGTAACTCC 321
Query 346 ACGTCTGGTGTTATGCGAGTC-TATACTTCCTCAATCAAA-GGCTACTCACCTACGCTTC 403
||||| ||| ||||||| | | |||||||||||||| ||| |||||| |||||| |||||
Sbjct 322 ACGTCCGGTTTTATGCGTG-CATATACTTCCTCAAT-AAATGGCTACACACCTATGCTTC 379
Query 404 AAGAAAGTCCTCTCAGCTTCCGTGTATTGCAACTATCCGGTGAATATCTCAATGGAGAGA 463
||||| | ||||| ||||| |||||| ||||||||||| ||||||||||||| ||||||
Sbjct 380 AAGAAGGCCCTCTGAGCTTTCGTGTAACGCAACTATCCGCTGAATATCTCAATAGAGAGA 439
Query 464 TGACTATATTTGCTACTATAGTGTTGCCTTCTAACATAACCGTCGTGAATCATTTATGGC 523
||||||||||||| ||||| |||| ||| ||||||| |||||| || |||||||||||||
Sbjct 440 TGACTATATTTGCCACTATGGTGTGGCCGTCTAACACAACCGTTGTCAATCATTTATGGC 499
Query 524 AAGACGGTCCCTTGAAGGAAGATGATAGACTTGGGATGCACGCTATGAGTGGAGATCATC 583
|||||||||| |||||||||| |||||| |||||||||||||| ||||||||| ||||||
Sbjct 500 AAGACGGTCCGTTGAAGGAAGGTGATAGGCTTGGGATGCACGCCATGAGTGGAAATCATC 559
Query 584 TTAAATCTATGGCTACTTTGGATTTGCTGTCGGGGCAAGTCACGACCACAAAAGCAGCTA 643
| ||||| ||||||| |||||||||| |||| || ||||||| |||||| ||||||||||
Sbjct 560 TCAAATCCATGGCTAATTTGGATTTGTTGTCCGGACAAGTCATGACCACTAAAGCAGCTA 619
Query 644 ACGATAACATGTTACTAGTTaaaaaaaTTCATGGACTAGTGAACGCGGTGTGTTGGGGTA 703
| ||||||||||||||||| |||| ||||||||||||||||| || ||||||||||| |
Sbjct 620 ATGATAACATGTTACTAGTCAAAAGCATTCATGGACTAGTGAATGCAGTGTGTTGGGGGA 679
Query 704 TTTTCATGCCTATTGGTGTCTTGGCTGCAAGGTACATGAGGACCTACAAAGGACTAGATC 763
||||||| || ||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 680 TTTTCATACCCATTGGTGTCATGGCTGCAAGGTACATGAGGACCTACAAAGGACTGGACC 739
Query 764 CCA-TGTGGTTCTACATAC 781
||| | |||||||||||||
Sbjct 740 CCACT-TGGTTCTACATAC 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5