BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952061
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 571 5e-162
AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 556 1e-157
AT1G60570.1 | Symbols: | Galactose oxidase/kelch repeat superf... 69.4 8e-11
> AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19860708-19862018 FORWARD LENGTH=1311
Length=1311
Score = 571 bits (309), Expect = 5e-162
Identities = 499/587 (85%), Gaps = 28/587 (5%)
Strand=Plus/Plus
Query 14 TTCACAAATGTCGTCCACCGCTTCAGCCTTCACGGACGGCCAACCACCGTGGAAGAAGAA 73
||| |||| || |||||||||||| | | ||| ||||||||||||||| |||||||||||
Sbjct 25 TTCCCAAAGGTTGTCCACCGCTTCCGGCGTCAAGGACGGCCAACCACCATGGAAGAAGAA 84
Query 74 GAAGCCGTCGAAAGATCCGACTCCGAACCCGTCCA-TTCCATATGATTTGATAGTGAGCA 132
||||| |||||| ||| ||||| |||| |||| || ||||||||||| | ||| ||| ||
Sbjct 85 GAAGCTGTCGAACGATACGACTTCGAATCCGT-CACTTCCATATGATGTAATACTGATCA 143
Query 133 TATTAGCCCGTGTCTCGAGATCGTATTACCCAAAACTCTCCTTAGTCTCCAAAAGCTTCC 192
| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 144 TCTTAGCCCGCGTCTCGAGATCGTATTACACAAATCTCTCCTTAGTCTCCAAAAGCTTCC 203
Query 193 GATCGATCCTTGCTTCACCGGAGCTATACCAAACCCGAACCCTCTTAGGCAAAACCGAGA 252
|||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 204 GATCAATCCTTACTTCACCGGAGCTTTACAAAACCCGAACCCTCTTAGGCAAAACCGAGA 263
Query 253 CTTTTCTCTACGTTTGCTTACGCTTCCCTGATGAAGCTAACCCTCGCTGGTTCACTCTTT 312
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 264 ATTTTCTCTATGTTTGCTTACGCTTCCCTGATGAAGCTAATCCTCGCTGGTTCACTCTCT 323
Query 313 ACCAG-AAACCTAATCAAACCCTAAC---T-a-a-------gaagaagaagaagaagaag 359
|| || |||||||||||||||||||| | | | |||||||||||||||||||
Sbjct 324 AC-AGGAAACCTAATCAAACCCTAACCGATCACACCACTAAGAAGAAGAAGAAGAAGAAG 382
Query 360 aa-a-g-aGGAG---TCAAGTGTTAAACTTTTGGCTCCAACCCCAGTTCTCAATTCTCCT 413
|| | | ||||| ||||||||||| || |||||||||| | || |||||||||||| |
Sbjct 383 AAGAAGGAGGAGAAGTCAAGTGTTAATCTGTTGGCTCCAATCTCAATTCTCAATTCTCAT 442
Query 414 CCTTTGGAATGGTCAAG-TCTCATCGCTGTTGGTTC-TAATCTTTACGCCATTACCGCAG 471
||| ||||||||||| | | |||| |||||| | | | |||| |||||||||| ||||
Sbjct 443 CCTGTGGAATGGTCA-GCTATCATATCTGTTGAT-CATTATCTCTACGCCATTAGTGCAG 500
Query 472 CCATCGACGATTCTCCATGCTCTAACGTTTGGTACCTTGACTGTCGAACTCATACTTGGC 531
|||||| | |||| | |||||||||| ||||| || ||||||||||| ||||||
Sbjct 501 ACATCGAAAAGGCTCCGTACTCTAACGTTCCTTACCTAGATTGTCGAACTCACACTTGGA 560
Query 532 TTGAAGCTCCAAGAATGAGATTGGCTCACACCAATAGT-AAGTTTGA 577
|||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 561 ATGAAGCTCCAAGAATGAGATTGGCTCACACTAATAGTGAA-TTTGA 606
Score = 296 bits (160), Expect = 3e-79
Identities = 215/242 (89%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 839 GGGTTTAGAAAGGCTGCCTAAGTTTGCTAAATACAGT-GCTGTTAAATTAGCGGATTATG 897
|||||||||| |||| ||||||||| ||| ||| | | |||| |||| ||||| ||||
Sbjct 964 GGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAG-TGTTCAATTGGCGGAATATG 1022
Query 898 GTGGTAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATAAGGAGAAGA 957
| || |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1023 GCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAGAAGA 1082
Query 958 TGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAATGAAGAGATTTGGGGGAAGG 1017
||||||||||||||||||||||||| ||||| || ||| | |||||||||||||||| |
Sbjct 1083 TGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGGAACG 1142
Query 1018 TCGAGTGGTTTGATGCGGTGCTTAGAGTCCCTAAGTCTTACAAAATCTTGTGTGCTACTG 1077
| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1143 TTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGTGCTACTG 1202
Query 1078 CT 1079
||
Sbjct 1203 CT 1204
Score = 193 bits (104), Expect = 4e-48
Identities = 129/141 (91%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 1131 TTAGAAGGGCTACCTAAGTTTTCTAGTTATTGTACTGTT-AGATTGGCGGAGTGTGGCGG 1189
|||||||||||||||||||||||||| |||| || |||| | ||||||||| | ||||||
Sbjct 968 TTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAGTGTTCA-ATTGGCGGAATATGGCGG 1026
Query 1190 CAAGCTGGTCGTTTTGTGGGACAAGTATGTGCCTGCGAGTGGGTATAAGGAGAAGATGAT 1249
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1027 GAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAGAAGATGAT 1086
Query 1250 TTGATGTGCGGAGATTTCGCT 1270
||| ||||| |||||||||||
Sbjct 1087 TTGGTGTGCAGAGATTTCGCT 1107
> AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19862289-19863625 FORWARD LENGTH=1337
Length=1337
Score = 556 bits (301), Expect = 1e-157
Identities = 424/483 (88%), Gaps = 10/483 (2%)
Strand=Plus/Plus
Query 102 CCGTCCA-TTCCATATGATTTGATAGTGAGCATATTAGCCCGTGTCTCGAGATCGTATTA 160
|||| || ||||| | ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 103 CCGT-CACTTCCAGAAGATTTGATAGTGAGCATCTTAGCCCGCGTCTCGAGATCGTATTA 161
Query 161 CCCAAAACTCTCCTTAGTCTCCAAAAGCTTCCGATCGATCCTTGCTTCACCGGAGCTATA 220
| |||| |||||| ||||||| |||| ||||||||| |||||| ||||||||||||| ||
Sbjct 162 CACAAATCTCTCCGTAGTCTCAAAAACCTTCCGATCAATCCTTACTTCACCGGAGCTTTA 221
Query 221 CCAAACCCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTACGTTTGCTTACGCTTCCC 280
| ||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||
Sbjct 222 CAAAACCCGAACCCTCTTAGGCAAACCCGAGACTTTTCTCTATGTCTGCCTACGCTTCCC 281
Query 281 TGATGAAGCTAACCCTCGCTGGTTCACTCTTTACCAGAAACCTAATCAAACCCTAACTaa 340
|||||||||||| ||||| ||||| | ||| |||| ||| ||||||||||||||||||
Sbjct 282 TGATGAAGCTAATCCTCGTTGGTTGATTCTCTACCGGAAGCCTAATCAAACCCTAACT-- 339
Query 341 gaagaagaagaagaagaagaaagaGGAGTCAAGTGTTAAACTTTTGGCTCCAACCCCAGT 400
||||||||||||||||||||||| ||||||||| | ||||||||||||| ||| |
Sbjct 340 ----AAGAAGAAGAAGAAGAAAGAGGATTCAAGTGTTCATCTTTTGGCTCCAATTCCAAT 395
Query 401 TCTCAATTCTCCTCCTTTGGAATGGTCAAGTCTCA-TCGCTGTTGGTTCTAATCTTTACG 459
|||||||||||| || |||||||||||||||| | |||||||||||||| |||| ||||
Sbjct 396 TCTCAATTCTCCAACTGTGGAATGGTCAAGTCT-AGTCGCTGTTGGTTCTTATCTGTACG 454
Query 460 CCATTACCGCAGCCATCGACGATTCTCCATGCTCTAACGTTTGGTACCTTGACTGTCGAA 519
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CCATTACCGCAGACATCAAAGATTCTCCATGCTCTAACGTTTGGTACCTTGACTGTCGAA 514
Query 520 CTCATACTTGGCTTGAAGCTCCAAGAATGAGATTGGCTCACACCAATAGTAAGTTTGATG 579
| || ||||||||||| |||||||| || || ||||||||| ||||||| | ||| |||
Sbjct 515 CGCACACTTGGCTTGATTCTCCAAGATTGCGACTGGCTCACATCAATAGTGACTTTAATG 574
Query 580 GGA 582
|||
Sbjct 575 GGA 577
Score = 403 bits (218), Expect = 2e-111
Identities = 410/498 (82%), Gaps = 32/498 (6%)
Strand=Plus/Plus
Query 594 CCCAGAAGACGGATATTCAAATT-GGAAAATATGGAAGGAAAGATTTACGTGA-ACGTTT 651
|||| || ||| | | ||||||| || |||||||||||||||||||||| | | | ||
Sbjct 671 CCCA-AAAACGAAAACTCAAATTCGG-AAATATGGAAGGAAAGATTTACAT-ACCCCCTT 727
Query 652 GTGTAGAG--TCTACTAAGG-AGGTTGT-GCTTGT-AACGCCAAAGATTATGACATGGGA 706
|| |||| || | | ||| ||| ||| || | | ||| |||||| || ||||||||||
Sbjct 728 GTCAAGAGAATC-A-T-AGGAAGGCTGTGGC-TCTAAAC-CCAAAGGTTTTGACATGGGA 782
Query 707 AGCGTTA-AATT---T--GGATTTGGATCGGGGTTCTCTTTGTACGATAGATAACGTAGT 760
|||| || ||| | | |||||||| |||||||| |||||| ||||| ||| |||
Sbjct 783 AGCGGTAGGATTGGGTACGAATTTGGATAGGGGTTCTTTTTGTATGATAGGGAACATAGC 842
Query 761 CTATCT-TTATAACCCTAGTGGAGTA-TTTCTATTTA-GAAAAAGTTTCATTAAGGAAGC 817
|||| | |||| |||||||||| | | ||| || | | || || || | |||||
Sbjct 843 CTAT-TGTTATGACCCTAGTGG-GAAGTTTAGATGGATG-AATTGTAACACTGCGGAAG- 898
Query 818 AGTAGTTTGGAGAATATTACG-GGGTTTAGAAAGGCTGCCTAAGTTTGCTAAATACAGTG 876
| || ||||| | |||| | |||||||||| |||| ||||||||||||| ||| |||
Sbjct 899 -G-AGACTGGAGCAGATTA-GAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTA 955
Query 877 CTGTTAAATTAGCGGATTATGGTGGTAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTG 936
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 956 CTGTTAAATTAGCGGAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTG 1015
Query 937 CAAGTGGGTATAAGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CAAGTGGGTATAAGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACA 1075
Query 997 ATGAAGAGATTTGGGGGAAGGTCGAGTGGTTTGATGCGGTGCTTAGAGTCCCTAAGTCTT 1056
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1076 GTGAAGAGATTTGGGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTT 1135
Query 1057 ACAAAATCTTGTGTGCTA 1074
| ||| || | |||||||
Sbjct 1136 ATAAATTCGTCTGTGCTA 1153
> AT1G60570.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:22311836-22312981 FORWARD LENGTH=1146
Length=1146
Score = 69.4 bits (37), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 956 GATGATTTGGTGTGCAGA-GATTTCGCTTGAAAAG-CGCAACAATGAAGAGATTTGGGGG 1013
|||||| |||||||| || |||| | |||| |||| | | | || |||||||||||||
Sbjct 1005 GATGATGTGGTGTGC-GATGATTGCACTTG-AAAGAAGTGATAGTGGAGAGATTTGGGGG 1062
Query 1014 AAGGTCGAGTGGTTTGATGCGGTGCTT 1040
|||||||||||||||| | | ||||||
Sbjct 1063 AAGGTCGAGTGGTTTGGTCCAGTGCTT 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5