BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952063
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1304 0.0
AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 817 0.0
AT2G20380.1 | Symbols: | Galactose oxidase/kelch repeat superf... 327 1e-88
> AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19862289-19863625 FORWARD LENGTH=1337
Length=1337
Score = 1304 bits (706), Expect = 0.0
Identities = 977/1104 (88%), Gaps = 33/1104 (3%)
Strand=Plus/Plus
Query 95 AATCGACCTCAAATCCATCACTTCCAGATGATTTGGTAGTGAACATCTTAGCCCGCGTCT 154
||||| || ||||||| ||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 89 AATCGTCCCCAAATCCGTCACTTCCAGAAGATTTGATAGTGAGCATCTTAGCCCGCGTCT 148
Query 155 CGAGATCGTATCACCCAAATCTCTCCTTAGTCTGTAAAAGCTTCCGATCGATTCTTGCTT 214
||||||||||| || ||||||||||| |||||| |||| ||||||||| || ||| |||
Sbjct 149 CGAGATCGTATTACACAAATCTCTCCGTAGTCTCAAAAACCTTCCGATCAATCCTTACTT 208
Query 215 CACCGGAGCTTTACCAGACTCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGT 274
|||||||||||||| | || |||||||||||||||||| ||||||||||||||||||| |
Sbjct 209 CACCGGAGCTTTACAAAACCCGAACCCTCTTAGGCAAACCCGAGACTTTTCTCTATGTCT 268
Query 275 GCTTACGCTTCCCTGATGAAGCTAATCCTCGCTGGTTCACTCTCTACCGGAAACCTAATC 334
|| |||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||
Sbjct 269 GCCTACGCTTCCCTGATGAAGCTAATCCTCGTTGGTTGATTCTCTACCGGAAGCCTAATC 328
Query 335 AAAACCTAACTaagaagaagaagaagaagaagaagaaaaaagaGGATTCAAGTGTTAATC 394
||| ||||||| ||||||||||||||| |||||||||||||||||| |||
Sbjct 329 AAACCCTAACT---------AAGAAGAAGAAGAAG---AAAGAGGATTCAAGTGTTCATC 376
Query 395 TTTTGGCTCCAACCCCAATTCTCAACTCTCCTCA-TGTAGAATGGGCAAGGCTCA-TTGC 452
|||||||||||| ||||||||||| ||||| | ||| |||||| |||| || | | ||
Sbjct 377 TTTTGGCTCCAATTCCAATTCTCAATTCTCC-AACTGTGGAATGGTCAAGTCT-AGTCGC 434
Query 453 TGTTGGTTCTAATCTTTACGCCATTACCGCAGCCATCGAAGATTCTCCATGCTCTAATGT 512
|||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 435 TGTTGGTTCTTATCTGTACGCCATTACCGCAGACATCAAAGATTCTCCATGCTCTAACGT 494
Query 513 TTGGTACCTTGACTGTCGAACTCACACTTGGCTTGAAGCTCCAAGAATGCGAATTGCTCA 572
||||||||||||||||||||| |||||||||||||| |||||||| ||||| | |||||
Sbjct 495 TTGGTACCTTGACTGTCGAACGCACACTTGGCTTGATTCTCCAAGATTGCGACTGGCTCA 554
Query 573 CACCAATAGTGAAC-TTGATAAGAATG-TGTACTTAGCTGGAAGCTCTGAAAATCCATAT 630
|| |||||||| || || || | | | ||| || | |||||||||||||| ||| ||
Sbjct 555 CATCAATAGTG-ACTTTAAT-GGGAGGACGTATTTCCCAGGAAGCTCTGAAAAGCCAGAT 612
Query 631 TCTTTGAACTGTGTTGAAGTGTACAACACAAAGACTCAAACTTGGAATCCCGTGCCGCCC 690
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 613 TCTTTGAACTGTGTTGAAGTGTACAACACAAATACTCAGACTTGGAATCCCGTGCCTCCC 672
Query 691 CAAAAACGGAAATTCAAGTTCGGAAATATGGAAGGAAAGATTTACATGA-ACCC-TGTTC 748
|||||||| ||| |||| ||||||||||||||||||||||||||||| | ||| || ||
Sbjct 673 CAAAAACGAAAACTCAAATTCGGAAATATGGAAGGAAAGATTTACAT-ACCCCCTTG-TC 730
Query 749 GAGAGAATCCTAGGAAGGTTGTGGCTCTAAAGCCAAAGGTTATGACATGGGAAGCGGTAG 808
|||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 731 AAGAGAATCATAGGAAGGCTGTGGCTCTAAACCCAAAGGTTTTGACATGGGAAGCGGTAG 790
Query 809 GA-TGGGATACGGATTTGGTTCA-GGGTTCTATTTGTATAATAGAGAACATAGCCTATTG 866
|| |||| |||| |||||| | | ||||||| ||||||| |||| |||||||||||||||
Sbjct 791 GATTGGG-TACGAATTTGGAT-AGGGGTTCTTTTTGTATGATAGGGAACATAGCCTATTG 848
Query 867 TTATGACCCTAGTGAAAAGTTTAGTTGGATAAAATT-TAACACT---GACGAAGATTGGA 922
|||||||||||||| |||||||| ||||| |||| ||||||| || | ||| ||||
Sbjct 849 TTATGACCCTAGTGGGAAGTTTAGATGGAT-GAATTGTAACACTGCGGAAGGAGACTGGA 907
Query 923 GAAGATTAGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAG 982
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GCAGATTAGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAG 967
Query 983 CGGATTACGGTGGTAAGCTGGTTGTTTTTTGGGACAAGTATGTAGCTGCAACTGGTTATA 1042
|||| || || || |||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct 968 CGGAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATA 1027
Query 1043 AGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTT 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 AGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTT 1087
Query 1103 GGGGGAAGGTCGAGTGGTTGGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTGT 1162
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1088 GGGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCT 1147
Query 1163 GTGCCAAATCTGCTTCTGTTTGAT 1186
|||| ||||||||| |||||||||
Sbjct 1148 GTGCTAAATCTGCTACTGTTTGAT 1171
> AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19860708-19862018 FORWARD LENGTH=1311
Length=1311
Score = 817 bits (442), Expect = 0.0
Identities = 920/1140 (81%), Gaps = 75/1140 (7%)
Strand=Plus/Plus
Query 98 CGACCTCAAATCCATCACTTCCAGATGATTTGGTAGTGAACATCTTAGCCCGCGTCTCGA 157
|||| || ||||| ||||||||| ||||| | || ||| ||||||||||||||||||||
Sbjct 102 CGACTTCGAATCCGTCACTTCCATATGATGTAATACTGATCATCTTAGCCCGCGTCTCGA 161
Query 158 GATCGTATCACCCAAATCTCTCCTTAGTCTGTAAAAGCTTCCGATCGATTCTTGCTTCAC 217
|||||||| || |||||||||||||||||| |||||||||||||| || ||| ||||||
Sbjct 162 GATCGTATTACACAAATCTCTCCTTAGTCTCCAAAAGCTTCCGATCAATCCTTACTTCAC 221
Query 218 CGGAGCTTTACCAGACTCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGTGCT 277
||||||||||| | || ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 222 CGGAGCTTTACAAAACCCGAACCCTCTTAGGCAAAACCGAGAATTTTCTCTATGTTTGCT 281
Query 278 TACGCTTCCCTGATGAAGCTAATCCTCGCTGGTTCACTCTCTACCGGAAACCTAATC-AA 336
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 282 TACGCTTCCCTGATGAAGCTAATCCTCGCTGGTTCACTCTCTACAGGAAACCTAATCAAA 341
Query 337 ----AACC--T---A--ACTaagaagaagaagaagaagaagaagaaaaaagaGGATTCAA 385
|||| | | ||||||||||||||||||||||||||||| | ||| | ||||
Sbjct 342 CCCTAACCGATCACACCACTAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGAAGTCAA 401
Query 386 GTGTTAATCTTTTGGCTCCAACCCCAATTCTCAACTCTCCTCATGTAGAATGGGCAAGGC 445
|||||||||| |||||||||| | |||||||||| |||| || ||| |||||| | | ||
Sbjct 402 GTGTTAATCTGTTGGCTCCAATCTCAATTCTCAATTCTCATCCTGTGGAATGGTC-A-GC 459
Query 446 --TCAT-TGCTGTTGGTTC-TAATCTTTACGCCATTACCGCAGCCATCGAAGATTCTCCA 501
|||| | ||||| | || | |||| |||||||||| |||| ||||||| | ||||
Sbjct 460 TATCATAT-CTGTT-GATCATTATCTCTACGCCATTAGTGCAGACATCGAAAAGGCTCCG 517
Query 502 TGCTCTAATGTTTGGTACCTTGACTGTCGAACTCACACTTGGCTTGAAGCTCCAAGAATG 561
| |||||| ||| ||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 518 TACTCTAACGTTCCTTACCTAGATTGTCGAACTCACACTTGGAATGAAGCTCCAAGAATG 577
Query 562 CGAATT-GCTCACACCAATAGTGAACTTGATAAGAAT-GTGTACTTAGCTGGAAGCTCTG 619
| ||| |||||||| ||||||||| |||| | |||| ||||| ||| | ||||||| ||
Sbjct 578 AG-ATTGGCTCACACTAATAGTGAATTTGA-AGGAATAGTGTATTTACCAGGAAGCTTTG 635
Query 620 AAAATCCATATTCTTTGAACTGTGTTGAAGTGTACAACACAAAGACTCAAACTTGGAATC 679
||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 636 AAAGTCCAGATTCTTTGAACTGTGTTGAAGTGTACAACACAATGACTCAGACTTGGAAAC 695
Query 680 CCGTGCCGCCCC-AAAAACGGAAATTCAAGTTCGGAAA-TATGGAAGGAAAGATTTAC-A 736
| ||||| |||| ||||||||| ||||| || ||||| | ||||| |||||||||| |
Sbjct 696 CGGTGCC-CCCCGAAAAACGGATGTTCAAATT-GGAAAATTTGGAAAAAAAGATTTACTA 753
Query 737 TGA-ACCCTGTTCGAG--AGAATC-----CTAGGAA-GGT-TGT----G-GCTCTAAAGC 781
| | | | ||| | ||| || || |||| ||| | | | ||| |||| |
Sbjct 754 CAAGAGC-T-TTC-ATTTAGACTCTAGGGCTGGGAAAGGTCTATCTTTGAGCTATAAATC 810
Query 782 CAAAGG-TTATGACATG-GGAAGCGGTAGGATGGGATACGGATTTGG-TTCAGGG-TTC- 836
|| | || ||||||| ||| ||||| || |||||||| | || |||| |||
Sbjct 811 GAA-GCATT-TGACATGTGGATT-GGTAGTATTGGATACGG-T--GGATTCATATCTTCG 864
Query 837 -TATT-T-GTATAATAGAGAACATAGCCTATTGTTATGACCCTAGTGAAAAGTTTAGTTG 893
| || | |||| |||||||| |||||||||| |||| | || | ||| |||| |||
Sbjct 865 CTCTTCTTGTATGATAGAGAATATAGCCTATTTTTAT--CG-TAAAGGAAATTTTATTTG 921
Query 894 GATAAAATTTAACACTGACGA-A--GATT---GGAGAAGATTAGAGGGTTTAGAAGGGCT 947
|| | | || || | | || | | || || ||| || ||||||||||||||||||
Sbjct 922 GAGAGGACTTGACGGTAA-GATACTGGTTTACGG-GAAAAT-AGAGGGTTTAGAAGGGCT 978
Query 948 ACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCGGATTACGGTGGTAAGCTGGTTGT 1007
|||||||||| |||||||| || |||| |||| ||||| || || || |||||||| ||
Sbjct 979 ACCTAAGTTTTCTAGATATTCTAGTGTTCAATTGGCGGAATATGGCGGGAAGCTGGTGGT 1038
Query 1008 TTTTTGGGACAAGTATGTAGCTGCAACTGGTTATAAGGAGAAGATGATTTGGTGTGCAGA 1067
||| ||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||
Sbjct 1039 TTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAGAAGATGATTTGGTGTGCAGA 1098
Query 1068 GATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTGGGGGAAGGTCGAGTGGTTGGATGC 1127
||||||||| ||||| || ||| || |||||||||||||||| || |||||||| |||||
Sbjct 1099 GATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGGAACGTTGAGTGGTTTGATGC 1158
Query 1128 GGTTCTTACAGTCCCTAAGTCTTATAAATTCGTGTGTGCCAAAT-CTGCTTCTGTTTGAT 1186
|| |||||||||||||||||||| ||| || ||||||| | | ||||| || ||||||
Sbjct 1159 TGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGTGCTAC-TGCTGCTACTCTTTGAT 1217
> AT2G20380.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:8794818-8795980 REVERSE LENGTH=1047
Length=1047
Score = 327 bits (177), Expect = 1e-88
Identities = 314/378 (83%), Gaps = 17/378 (4%)
Strand=Plus/Plus
Query 815 ATACGGATTT-GGTTCAG-GGTTCTATTTGTATAATAGAGAACA-TAGCCTATTGTTATG 871
|||| ||||| || || | |||||| |||| || |||||| | | || ||||| |||||
Sbjct 680 ATACAGATTTAGG-TC-GAGGTTCTTTTTGCATGATAGAGGAGATTA-CCTATCATTATG 736
Query 872 ACCCTAGTGAAAAGTTTAGTTGGATAA-AATTTAACACTGACGAAGATTGGAGAAGATTA 930
|||| |||| ||||||||| |||| || || ||| || | || ||||||| ||||
Sbjct 737 ACCCCAGTGTAAAGTTTAGATGGAGAAGAA---GACAGGGA-GGAGTTTGGAGATCATTA 792
Query 931 GAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCGGATTAC 990
| ||| |||||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 793 GTGGGATTAGAAGGGCTACCTAAGTTTGCTAGATATAGTAGTGTTAAGTTGGCGGATTGT 852
Query 991 GGTGGTAAGCTGGTTGTTTTTTGGGACAAGTATGTAGC-TGCAACTGGTTATAAGGAGAA 1049
|||||||||||||||||||| ||| |||||||||| || ||||| ||| ||| |||||||
Sbjct 853 GGTGGTAAGCTGGTTGTTTTGTGGCACAAGTATGT-GCCTGCAAGTGGGTATGAGGAGAA 911
Query 1050 GATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAA-GAGATTTGGGGGA 1108
|||| ||||||| ||||| ||||| ||||||||||||| || ||| |||||||||||||
Sbjct 912 GATGGTTTGGTGCGCAGAAATTTCCCTTGAAAAGCGCAGCAA-GAAAGAGATTTGGGGGA 970
Query 1109 AGGTCGAGTGGTTGGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTGTGTGCC- 1167
|| |||||||||| ||||| ||||||| ||||||||||| ||| ||||||| || | |
Sbjct 971 AGATCGAGTGGTTCGATGCAGTTCTTAGAGTCCCTAAGTATTACCAATTCGT-TGGGGCT 1029
Query 1168 AAATCTGCTTCTGTTTGA 1185
||||||||| ||||||||
Sbjct 1030 AAATCTGCTACTGTTTGA 1047
Score = 250 bits (135), Expect = 2e-65
Identities = 213/250 (85%), Gaps = 7/250 (3%)
Strand=Plus/Plus
Query 112 TCACTTCCAG-ATGATTTGGTAGTGAACATCTTAGCCCGCGTCTCG-AGATCGTATCACC 169
|||||||| | |||||||| |||||| ||||||||||||| ||||| | ||| ||| |||
Sbjct 55 TCACTTCC-GAATGATTTGATAGTGACCATCTTAGCCCGCCTCTCGCA-ATCATATTACC 112
Query 170 CAAATCTCTCCTTAGTCTGTAAAAGCTTCCGATCGATTCTTGCTTCACCGGAGCTTTACC 229
| || ||||||||||||| |||| |||| || | || ||||||||||||||||||||||
Sbjct 113 CTAAGCTCTCCTTAGTCTCCAAAACCTTCAGAGCAATCCTTGCTTCACCGGAGCTTTACC 172
Query 230 AGACTCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGTGCTTACGCTTCCCTG 289
||||||||| ||||||| || || ||||| ||||||||||| |||||| |||| ||||
Sbjct 173 AGACTCGAATCCTCTTAAGCCGCACTGAGACATTTCTCTATGTTTGCTTAAGCTTTCCTG 232
Query 290 ATGAAGCTAATCCTCGCTGGTTCACTCTCTACCGGAAACCTAATCAAAACCT-A--ACTa 346
|||| |||| ||| ||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 233 GTGAACCTAACCCTGGCTGGTTCACTCTCTACCGGAAACCTAATCAAACCCTTACCACTA 292
Query 347 agaagaagaa 356
| ||||||||
Sbjct 293 AAAAGAAGAA 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5