BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952067 Length=1208 Score E Sequences producing significant alignments: (Bits) Value AT3G28330.1 | Symbols: | F-box family protein-related | chr3:1... 215 9e-55 > AT3G28330.1 | Symbols: | F-box family protein-related | chr3:10586566-10587712 REVERSE LENGTH=1050 Length=1050 Score = 215 bits (116), Expect = 9e-55 Identities = 346/455 (76%), Gaps = 24/455 (5%) Strand=Plus/Plus Query 562 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAGCATTGTC-CATTTGCCTT-CATCTT 619 |||||||||||||||||||||||||||||||||| || || | | ||| |||| || || Sbjct 400 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAACAGTGACACTTTT-CCTTTCAGCTA 458 Query 620 TGTACTATCAATATTTTTATCGTTCA-ATTAGCTTGAATGGAAATCTTTACTGGCTCAAC 678 | || | |||| | ||| | | || ||||||||||| |||| ||||||||||||| | Sbjct 459 TATA-TCTCAAGAGTTTAA-CAATCCCATTAGCTTGAACGGAAGTCTTTACTGGCTCGCC 516 Query 679 CGCAATAGTGACAATGAAGATGTT-ATCGTATCCCAT-GATTTCTATGCAACTGGCA-CG 735 | | | || || ||||| || || |||||| || |||||||||| || | | Sbjct 517 CACGGTTCCGAGTATCAAGAT-TTCATTGTATCC-ATCGATTTCTATGTTGTTGATAGCC 574 Query 736 GATTCTGATCGATTTCGTGTTACACG-TTTCCCTGATTCAGGA-AAACATCCCAAATTCA 793 | | ||||||||| || | ||| | ||||| ||||| || | ||| ||| ||||||| Sbjct 575 GCT-CTGATCGATGCCGCGCTACGCCATTTCC-TGATTTAG-ATAAAGTTCCGAAATTCA 631 Query 794 AAAGAGCATGCACTATTTTTCAAGGATTTCTCATGTATATGAATGTAGTGTCTATAACCA 853 |||| | ||||| | || |||||||| ||||||||||||||| || | |||||| ||| Sbjct 632 GAAGAACTTGCACAACTTCTCAAGGATGTCTCATGTATATGAACATATTCTCTATA-CCA 690 Query 854 AA-GATGATGG-AAGTCTAGAGGATAAGCTAAGTATATGGAAGCTTCAGAGCGGGGAATG 911 || | |||||| || | ||||||| ||| || || |||||| ||| ||||| || |||| Sbjct 691 AAAGTTGATGGTAATT-TAGAGGACAAGTTATGTGTATGGAGGCTAGAGAGCTGGCAATG 749 Query 912 GCAACTAGTAT-CTGAAATCTCTGTGGATTGTGTTAATCCCAGTTTTGATCATATTCCAG 970 || |||||||| | ||||| ||| |||||| | |||| | |||| ||| ||||||| | Sbjct 750 GCGACTAGTATTC-GAAATATCTTTGGATTCTATTAAGACTGGTTTCGATTATATTCC-G 807 Query 971 T-GACAATAAACTCTGTTGATGCTAAAACAGTCTA 1004 | | || | || || ||||||||||||||||||| Sbjct 808 TTGGGAACAGACCCTTTTGATGCTAAAACAGTCTA 842 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59337044190 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5