BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952076
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3... 597 5e-170
AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 444 6e-124
AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein wi... 102 4e-21
> AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:19898788-19900065
REVERSE LENGTH=1193
Length=1193
Score = 597 bits (323), Expect = 5e-170
Identities = 446/503 (89%), Gaps = 18/503 (4%)
Strand=Plus/Plus
Query 112 TGCTCTAC-CTTCTACTACAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGA 170
|||||| | |||||||| |||||| ||||| |||||||||||||| || |||||||||||
Sbjct 418 TGCTCT-CACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGA 476
Query 171 CAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCC 230
|||||| ||||||||||| |||| ||||||||||| | |||||||||||||||||
Sbjct 477 CAACATTCTCTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCC 530
Query 231 AGATAAGTGTCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGATGATGCTCTT- 288
|||| |||||||||| || ||||| || |||||||||||||| ||||| ||||||| ||
Sbjct 531 AGATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTG 588
Query 289 TCTGAAGCAGTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTACT 348
| |||||||||| |||||||||| |||| ||| || |||||||| |||||||||||| ||
Sbjct 589 TGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCT 648
Query 349 TTGCTTTTCATT-GACA-AGAGTGAAGTGAAGATGAAAGATTCGGAGTGTCCTCATTGCC 406
||| ||||| || || | |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 649 TTGGTTTTC-TTAGA-AGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTC 706
Query 407 ATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGT 466
|||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||
Sbjct 707 ATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGT 766
Query 467 TTCAGAAGCTAGCAGG-GAACGAAAGAGGAAGAGATAATATTTCGCTCGCGACGATGGCA 525
||||||||||||| || |||||| |||||||||||| |||||| ||| ||||||||||||
Sbjct 767 TTCAGAAGCTAGC-GGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCA 825
Query 526 AAGAAAAAGAACTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGT 585
||| ||||||| |||||||||||| |||||||||| ||||||||||||| |||||||||
Sbjct 826 AAGCAAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGGT 885
Query 586 TGCTTATACATGAAATGCAGGTG 608
|||||||||||||| ||||||||
Sbjct 886 TGCTTATACATGAAGTGCAGGTG 908
> AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518:
Zinc finger, C3HC4 type (RING finger), signature
and Pfam:PF01485 IBR domain; blastp match of 25% identity
and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse) {Mus musculus}
| chr2:11253700-11254930 REVERSE LENGTH=1231
Length=1231
Score = 444 bits (240), Expect = 6e-124
Identities = 411/490 (84%), Gaps = 25/490 (5%)
Strand=Plus/Plus
Query 129 CAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCTCTCAATCGA 188
||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||| |
Sbjct 534 CAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAGACAACATTCTCTCAATCAA 593
Query 189 GTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCCAGATAAGTGTC-GTCAAA 247
|| | ||| ||||||| |||| || | ||||||||| ||||| || | ||||||
Sbjct 594 ATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGCCCGATAAATG-CGGTCAAA 646
Query 248 TCTTGCCAAGAGAGGTTTTTGATCAGT-GGGATGATGCTCTTT-CTGAAGCAGT-ATTGA 304
|| |||||||||| || ||||||| || |||| || ||||||| | || || || ||| |
Sbjct 647 TCCTGCCAAGAGAAGTCTTTGATCGGTGGGGA-GACGCTCTTTGC-GAGGCGGTGATT-A 703
Query 305 TGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTACTTTGCTTTTCATT-GAC 363
|| ||||||||||||| |||||||||||||||||||||||| ||||||| ||| || |||
Sbjct 704 TGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTGCTTTGCTCTTC-TTGGAC 762
Query 364 AAGAGT---GAAGTGAAGATGAAAGAT-TCGGAGTGTCCTCATTGCCATAGAATGGTGTG 419
||||| |||| ||||||||| | | |||||||||||||||||||||||||||||| |
Sbjct 763 GAGAGTGAAGAAGAGAAGATGAATG-TATCGGAGTGTCCTCATTGCCATAGAATGGTGAG 821
Query 420 TGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTTCAGAAGCTAGC 479
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 822 TGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGAGGAGTTTCAAAAGCTAGC 881
Query 480 AGGGAACGAAAGAGGAAGAGATAATAT-TTCGCTCGC-GACGATGGCAAAGAAAAAGAAC 537
| ||||||||||| ||||| |||| || | | | || |||||| ||| |||||
Sbjct 882 CGAGAACGAAAGAGAAAGAGGGGATATATT-GTT-GAAGAATATGGCAGAGAGTAAGAAG 939
Query 538 TGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATACATG 597
|||| ||||||| |||||||||| |||| ||||| || ||| |||||||||||||||||
Sbjct 940 TGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAATCTGAGGGTTGCTTATACATG 999
Query 598 AAATGCAGGT 607
|| |||||||
Sbjct 1000 AAGTGCAGGT 1009
> AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein
with TIFY domain | chr4:12645564-12647864 FORWARD LENGTH=1305
Length=1305
Score = 102 bits (55), Expect = 4e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 604 AGGTGGATGCTGTGTTGTCGTTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 661
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 526 AGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 583
Score = 89.8 bits (48), Expect = 3e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 663 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTGGCCTTAAG 713
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 701 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCCTTAAG 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5