BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952076 Length=755 Score E Sequences producing significant alignments: (Bits) Value AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3... 597 5e-170 AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 444 6e-124 AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein wi... 102 4e-21 > AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:19898788-19900065 REVERSE LENGTH=1193 Length=1193 Score = 597 bits (323), Expect = 5e-170 Identities = 446/503 (89%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 112 TGCTCTAC-CTTCTACTACAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGA 170 |||||| | |||||||| |||||| ||||| |||||||||||||| || ||||||||||| Sbjct 418 TGCTCT-CACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGA 476 Query 171 CAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCC 230 |||||| ||||||||||| |||| ||||||||||| | ||||||||||||||||| Sbjct 477 CAACATTCTCTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCC 530 Query 231 AGATAAGTGTCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGATGATGCTCTT- 288 |||| |||||||||| || ||||| || |||||||||||||| ||||| ||||||| || Sbjct 531 AGATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTG 588 Query 289 TCTGAAGCAGTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTACT 348 | |||||||||| |||||||||| |||| ||| || |||||||| |||||||||||| || Sbjct 589 TGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCT 648 Query 349 TTGCTTTTCATT-GACA-AGAGTGAAGTGAAGATGAAAGATTCGGAGTGTCCTCATTGCC 406 ||| ||||| || || | |||||||||| ||||||||||||||||||||||||||||| | Sbjct 649 TTGGTTTTC-TTAGA-AGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTC 706 Query 407 ATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGT 466 |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| Sbjct 707 ATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGT 766 Query 467 TTCAGAAGCTAGCAGG-GAACGAAAGAGGAAGAGATAATATTTCGCTCGCGACGATGGCA 525 ||||||||||||| || |||||| |||||||||||| |||||| ||| |||||||||||| Sbjct 767 TTCAGAAGCTAGC-GGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCA 825 Query 526 AAGAAAAAGAACTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGT 585 ||| ||||||| |||||||||||| |||||||||| ||||||||||||| ||||||||| Sbjct 826 AAGCAAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGGT 885 Query 586 TGCTTATACATGAAATGCAGGTG 608 |||||||||||||| |||||||| Sbjct 886 TGCTTATACATGAAGTGCAGGTG 908 > AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating enzyme 7 interacting protein 4 (UbcM4- interacting protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518: Zinc finger, C3HC4 type (RING finger), signature and Pfam:PF01485 IBR domain; blastp match of 25% identity and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating enzyme 7 interacting protein 4 (UbcM4- interacting protein 4) (RING finger protein 144). (Mouse) {Mus musculus} | chr2:11253700-11254930 REVERSE LENGTH=1231 Length=1231 Score = 444 bits (240), Expect = 6e-124 Identities = 411/490 (84%), Gaps = 25/490 (5%) Strand=Plus/Plus Query 129 CAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCTCTCAATCGA 188 ||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||| | Sbjct 534 CAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAGACAACATTCTCTCAATCAA 593 Query 189 GTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCCAGATAAGTGTC-GTCAAA 247 || | ||| ||||||| |||| || | ||||||||| ||||| || | |||||| Sbjct 594 ATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGCCCGATAAATG-CGGTCAAA 646 Query 248 TCTTGCCAAGAGAGGTTTTTGATCAGT-GGGATGATGCTCTTT-CTGAAGCAGT-ATTGA 304 || |||||||||| || ||||||| || |||| || ||||||| | || || || ||| | Sbjct 647 TCCTGCCAAGAGAAGTCTTTGATCGGTGGGGA-GACGCTCTTTGC-GAGGCGGTGATT-A 703 Query 305 TGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTACTTTGCTTTTCATT-GAC 363 || ||||||||||||| |||||||||||||||||||||||| ||||||| ||| || ||| Sbjct 704 TGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTGCTTTGCTCTTC-TTGGAC 762 Query 364 AAGAGT---GAAGTGAAGATGAAAGAT-TCGGAGTGTCCTCATTGCCATAGAATGGTGTG 419 ||||| |||| ||||||||| | | |||||||||||||||||||||||||||||| | Sbjct 763 GAGAGTGAAGAAGAGAAGATGAATG-TATCGGAGTGTCCTCATTGCCATAGAATGGTGAG 821 Query 420 TGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTTCAGAAGCTAGC 479 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 822 TGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGAGGAGTTTCAAAAGCTAGC 881 Query 480 AGGGAACGAAAGAGGAAGAGATAATAT-TTCGCTCGC-GACGATGGCAAAGAAAAAGAAC 537 | ||||||||||| ||||| |||| || | | | || |||||| ||| ||||| Sbjct 882 CGAGAACGAAAGAGAAAGAGGGGATATATT-GTT-GAAGAATATGGCAGAGAGTAAGAAG 939 Query 538 TGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATACATG 597 |||| ||||||| |||||||||| |||| ||||| || ||| ||||||||||||||||| Sbjct 940 TGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAATCTGAGGGTTGCTTATACATG 999 Query 598 AAATGCAGGT 607 || ||||||| Sbjct 1000 AAGTGCAGGT 1009 > AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein with TIFY domain | chr4:12645564-12647864 FORWARD LENGTH=1305 Length=1305 Score = 102 bits (55), Expect = 4e-21 Identities = 57/58 (98%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 604 AGGTGGATGCTGTGTTGTCGTTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 661 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 526 AGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 583 Score = 89.8 bits (48), Expect = 3e-17 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 663 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTGGCCTTAAG 713 |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 701 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCCTTAAG 751 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36670927310 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5