BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952083
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52390.1 | Symbols: | PAR1 protein | chr5:21263936-21265264... 800 0.0
> AT5G52390.1 | Symbols: | PAR1 protein | chr5:21263936-21265264
REVERSE LENGTH=1024
Length=1024
Score = 800 bits (433), Expect = 0.0
Identities = 503/538 (93%), Gaps = 0/538 (0%)
Strand=Plus/Plus
Query 86 ACGATGTGAAGTGCGAGAATCTGGATGAAGACACGTGTGCATTCGCGGTCTCGTCCACTG 145
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 162 ACGATGTGAAGTGCGAGAATCTGGATGAAAACACGTGTGCCTTCGCGGTCTCGTCCACTG 221
Query 146 GAAAACGTTGCGTTTTGGAGAAGAGCGTGAGGAGGAGCGGGATCGAGGTGTACACATGTC 205
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 222 GAAAACGTTGCGTTTTGGAGAAGAGCATGAAGAGGAGCGGGATCGAGGTGTACACATGTC 281
Query 206 GATCATCGGAGATAGAAGCGGACAAGGTCACAAACATAATTGAATCAGACGAGTGCATTA 265
||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 282 GATCATCGGAGATAGAAGCTAACAAGGTCACAAACATTATTGAATCGGACGAGTGCATTA 341
Query 266 AAGCGTGTGGTCTAGACAGGAAATCTTTGGGTATATCTTCGGACGCATTGTTGGAATCCC 325
||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 342 AAGCGTGTGGTCTAGACCGGAAAGCTTTAGGTATATCTTCGGACGCATTGTTGGAATCTC 401
Query 326 GGTTTACACAGAAACTCTGCTCGGTTAAATGCTTAAACCAATGCCCTAACGTCGTCGATC 385
||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 402 AGTTCACACATAAACTCTGCTCGGTTAAATGCTTAAACCAATGTCCTAACGTAGTCGATC 461
Query 386 TCTTCTTCAACCTTGCTGCAGGCGAAGGAGTGTATTTGCCAAAGCTATGTGAATCACAAG 445
||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 462 TCTACTTCAACCTTGCTGCTGGTGAAGGAGTGTATTTACCAAAGCTATGTGAATCACAAG 521
Query 446 AAGGAAAGTCAAGAAGAGCGATGTCGGAAATTAGGAGCTCGGGAATTGTAATGGACACTC 505
|||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 522 AAGGGAAGTCAAGAAGAGCAATGTCGGAAATTAGGAGCTCGGGAATTGCAATGGACACTC 581
Query 506 CCGGACCGGTTGGACCGGTTAGGTTGGGCGAGATGGCACCGGAGCCGGCTACATCAATGG 565
| |||||||||||| || | |||||||||||| ||||| ||||||||||| |||||||
Sbjct 582 TTGCACCGGTTGGACCAGTCATGTTGGGCGAGATAGCACCTGAGCCGGCTACTTCAATGG 641
Query 566 ACCACATGCCTTACGTGCCGGCACCTTCACCGTATTAATTAAGGCAACGGAAAATGGA 623
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 642 ACAACATGCCTTACGTGCCGGCACCTTCACCGTATTAATTAAGGCAAGGGAAAATGGA 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040019906
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5