BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952086

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44790.1 | Symbols: UCC2 | uclacyanin 2 | chr2:18461906-1846...   416    1e-115


> AT2G44790.1 | Symbols: UCC2 | uclacyanin 2 | chr2:18461906-18463309 
REVERSE LENGTH=962
Length=962

 Score =  416 bits (225),  Expect = 1e-115
 Identities = 301/335 (90%), Gaps = 15/335 (4%)
 Strand=Plus/Plus

Query  204  GTAGGAATAAAGTATTTCATCTGTCCTACACCTGGTCACTG-TG--CCAAT---GGCATG  257
            ||||||||||| |||||||||||| ||||||||||||||||  |  |||||   ||||||
Sbjct  372  GTAGGAATAAACTATTTCATCTGTTCTACACCTGGTCACTGCAGAACCAATGGCGGCATG  431

Query  258  AAGCTAGCCGTTACTGTCGTAGCCGCCTCTGCCGGACCTCCGGCCACTCCCACGCCCCCG  317
            ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| || 
Sbjct  432  AAGCTAGCCGTTAATGTCGTAGCCGGTTCTGCCGGACCTCCGGCCACTCCCACGCCACCT  491

Query  318  TCTACAACTCCGGGAACTCCTACCACACCGGACTCACCTCCGGCTGGCGGATCACCCAC-  376
            ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| 
Sbjct  492  TCTTCAACTCCGGGAACTCCTACCACACCGGAATCACCTCCGTCTGGCGGATCACCCACA  551

Query  377  C--AC-AC-CC-ACACCTGATTCAGGGTCAACTTCTCCTCCTCC---ACCAAAGCCAAGT  428
            |  || || || ||||||| | |||| |||||||||||||||||   ||||||| |||||
Sbjct  552  CCCACCACACCCACACCTGGTGCAGGTTCAACTTCTCCTCCTCCTCCACCAAAGGCAAGT  611

Query  429  GGTGCGTCAAAGGGAGTGATGAGTTACGTTTTGGTCGGAGTCTCGATGGTTTTGGGTTAT  488
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  612  GGTGCGTCTAAGGGAGTGATGAGTTACGTTTTGGTGGGAGTCTCGATGGTTTTGGGTTAT  671

Query  489  GCTTTGTGGATGTAATTGGTTTAGTGAGCCAGGGT  523
            | |||||||||||||||||||||| ||||||||||
Sbjct  672  GGTTTGTGGATGTAATTGGTTTAGAGAGCCAGGGT  706


 Score =  209 bits (113),  Expect = 2e-53
 Identities = 179/208 (86%), Gaps = 16/208 (8%)
 Strand=Plus/Plus

Query  1    TCTCTCTTCTA-AGT--a-aaaaaaTGGCAATGAATGGTTTGTCCAAGATGGCTGCAGCC  56
            ||||||||||| |||  | |||||||||||||||||||||||||||||||||||| ||||
Sbjct  54   TCTCTCTTCTACAGTAAACAAAAAATGGCAATGAATGGTTTGTCCAAGATGGCTGTAGCC  113

Query  57   GCCGCAACTGCTCTTCTCCTAGTCCTGACCATTGTCCCGGCCACAGTAGCTGTGACTTAC  116
            ||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct  114  GCCGCAACTGCTCTTCTCCTAGTTCTGACCATTGTCCCGGGCGCAGTAGCTGTGACTTAC  173

Query  117  ACGGTGGGAGACGGTCAACAATGGGACAGTGGTGTGGACTACACAGTTTGGGTTGCCGGA  176
            ||  | | | | || |  ||      |  ||||||||||||| ||| ||||| | |||||
Sbjct  174  ACTATTG-A-ATGGAC--CA------C--TGGTGTGGACTACTCAGGTTGGGCTACCGGA  221

Query  177  AAGACTTTCAGGGTTGGTGACATTCTAG  204
            ||||||||||||||||||||||||||||
Sbjct  222  AAGACTTTCAGGGTTGGTGACATTCTAG  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25016605206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5